RNA id: XM_034310487.1


Basic Information

Item Value
RNA id XM_034310487.1
length 2431
RNA type mRNA
GC content 0.44
exon number 9
gene id palmda
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 17975631 ~ 17985549 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGGAAGAGAGTAGCATGAGATTTCCTAACAGATCTTCAATTGATCCAGATCGCTTTCAGCTCACAAAAGCCACAATGGAAGAGGCAGAACTGTTAAAGGAGAGACTTCAAGCCATTACAAAAAAACGAAAAATCCAGGAGGACATTGTCTCAAAGCGGCTGGAGATCGACAAGGAAAAACTTAAACTTCAGCAACTGAAGAAAAAATCTGCAAGAGATCTATGGCTTATGGGTGGCACGAGTGCTGGAGCGGCCCAGAAGGAGCAGAAAGCTCAGGATGTCACCCAGCAGACCAAAGCACTACAGGCTAACATTCATCTGATAGAGAAAGAAATTGAGGCTCTGGAGAGGGAAGAGCTCAACATCTCCACAAATGAAGGCCTCATCCTGAACAGGCTGAAAGCCATTGAGAAGTCCACAGAGGACATTATTAAGGCAGCAAATGAAAATTTCAAGTCAGAACCTGTCCATGTTTATTCAGGAATTCCAGATACTCAAAAATCTTTAAACATGAGGAAACAGCCAACTGTGGATCAAGGAACCAAAATTGACCAACAGAAACCTGCTTTGTTTGCAATGGAGATCAATGTGCAGAAGGACCTGCGCACCGGTGAGAGCCGCGTCGTCTCCACCAGCACAGTCCCGGCCCAGGAATTACAGCAGCGCGGCATCAAGGTGTACGATGACGGCCGTAAGTCTGTGTACGCTTTGCATACTGCCTTGGAACAGCCTGAAGCCAATGGAGTGGATGAGCTCAGTCCTAAGGAGGTGGAGGAGCTCCTCAAACAGGCCacagagaaaaggaagaagccTCAAGAGCAAAATGAGCCTCTGTGTATCAAGAACTACCAGAATAGCCACTGCTCAGAGATTTGTAATATGGATATGAGTGAATGGCCAGAGCTAGAGTACAGTCACAGTAACCTACACTATCCCTACCAGGAAATTCATGAACCTGCTCACATGTTCCATCATTACAGTGACCAACATGAGTATTATCACAACAGCAATGGCAACAGCTATGAGATATATGGAGGGGAAACAAGAAGTGACCCAAAGCACTTTTACGACCCCCGAGAGAGACACAGAAGAACTCCAAGTCAGCATGTGGACTCTGTTGTGAATCAAGTACCTCCTTTGTCCTACAGAGAGAACCCTAAACTCAGCATCCTAAACACTTTGCCTTCAGATGAACCTGTCTCTATGATCTTCATGGGATATCAGAAAGCTGAGGAAGATGCACAGAGCTATGAAGGCTCCATTCAGGCAGAGCTCGTCATCATCGGAGACGGTGAAGAAGAAGCCTTAACCAGTGACACTCCTTTCCAAAAAAGACACGTCCATTCTCTCCAGAACCTCAATACCAACAATGCGTCCACACACTTGGCCTCTGAGACGTCGTCTCCAGCTTCCCTGTACAGCCAAACGGTGTAGCAAGTGGCAGATGATGGAACTCGGCTCAAAGGCTTCACGGAGGAAACTGAAGATTGCTGACTACAAAATCAAAAAGACTCACCTCGCAAGAACTTTAGGTATCCAGTTGGAGTGAAAGAAGCAAGAACGTCTGACTGGATTTGCATAGGGATAAGAGTCTCGCTTTGAGTCTGAGAGGTCATCGATTCAAATCTCAGCCCTTCTTTCTTATGAACCATGATATAATTCAGATTTATTCCTGTCAGCAGCATGTCATTAGCAAATTTAATGTGAAAATTGATTAAATGTATAATGGACTCAAAAAGCCCAAAATAATTAAGTTAGTAAAGATACATAATTGCTTCAAACCGCCACATAACCGCAGTCTTATTATAATCAGAATGTCAATAATATACTCATCATTTCCTAAGGCGGTTATGCTGTGTACCCAAAAATAATCTTGCTGCAATGTTCTGATGTTCTAATGgcaataatctaataataatctttttctctcacagagTTCTTGGCTGTCACTTACATAACATTCCCCAAATAGACAAAAGCTAACATTACATTTGTGTTAATCGTTCCTGCAAACAATAATATTGCGGCAGCACTGGAACCATAATATTTTAGCTaatctaaaatgattttgtgCAGGTGCCACCCTCCTGGAACAAGAAGCTGTCATGTAACTGGTGTGACCTAGCTAGTGTTTGGGAATTGGACCTAAATAAATTAGGAGAAAAAACAcgtaaatatattaaaaatgtggtGATGTAGTGGGTCGCGTTGTTGCCTCacggctccagggtcccaggttcgatcctgaactcggattactgtctgtgtggagtttcatatgttcttcCCCTGTCCATATGAATTTCTTCAAGGTTCTCTAGTTTCATCCCaccttgttaaaaaaacatgccagtaggtggactggctattctaaattgcctcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtctatggtgccctgtgatgg

Function

GO: NA

KEGG:

id description
K16519 AKAP2; A-kinase anchor protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269607 lncRNA downstream 486199 17486631 ~ 17489432 (-) False G227786
TU269609 lncRNA downstream 486199 17486631 ~ 17489432 (-) True G227786
TU269582 lncRNA downstream 537045 17434055 ~ 17438586 (-) False psenen
TU269583 lncRNA downstream 537045 17434055 ~ 17438586 (-) True psenen
TU269561 lncRNA downstream 568406 17405948 ~ 17407225 (-) True G227755
TU270036 lncRNA upstream 92358 18074596 ~ 18074799 (-) True G228131
TU270092 lncRNA upstream 406270 18388508 ~ 18392636 (-) True rwdd3
TU270099 lncRNA upstream 435216 18417454 ~ 18418564 (-) True G228188
TU270408 lncRNA upstream 579199 18561437 ~ 18618921 (-) False pxylp1
TU270432 lncRNA upstream 623689 18605927 ~ 18608241 (-) True G228483
XM_034310635.1 mRNA downstream 2706 17962990 ~ 17972925 (-) False si:ch211-153l6.6
XM_026934737.2 mRNA downstream 4743 17962990 ~ 17970888 (-) True si:ch211-153l6.6
XM_026934833.2 mRNA downstream 14183 17928354 ~ 17961448 (-) True agla
XM_026934832.2 mRNA downstream 14183 17928354 ~ 17961448 (-) False agla
XM_026935137.2 mRNA downstream 86879 17878198 ~ 17888752 (-) False olfml2bb
XM_026934718.2 mRNA upstream 24206 18006444 ~ 18034974 (-) True plppr4a
XM_034310633.1 mRNA upstream 342302 18324540 ~ 18345891 (-) True ptbp2b
XM_026934950.2 mRNA upstream 406874 18389112 ~ 18392745 (-) False rwdd3
XM_026934925.2 mRNA upstream 410929 18393167 ~ 18400086 (-) True LOC113539254
XM_034310839.1 mRNA upstream 420489 18402727 ~ 18422483 (-) False LOC113539356
TU268927 other downstream 1611327 16363381 ~ 16364304 (-) False si:dkey-118k5.3
TU268923 other downstream 1658286 16316651 ~ 16317345 (-) True G227205
TU268676 other downstream 1810595 16119297 ~ 16165036 (-) False G226991
TU268481 other downstream 2130848 15812389 ~ 15844783 (-) True G226830
TU267049 other downstream 4606781 13367763 ~ 13368850 (-) True G225622
XR_003403925.1 other upstream 1232521 19214759 ~ 19214923 (-) True LOC113539409
TU270720 other upstream 1726077 19708315 ~ 19708841 (-) True G228758
trnae-cuc_28 other upstream 3369005 21351243 ~ 21351314 (-) True trnae-cuc_28
XR_004579494.1 other upstream 3768897 21751135 ~ 21811084 (-) True gdpd5b
XR_004579495.1 other upstream 3768897 21751135 ~ 21811083 (-) False gdpd5b

Expression Profile