RNA id: XM_026934866.2


Basic Information

Item Value
RNA id XM_026934866.2
length 1592
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC113539219
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 17142345 ~ 17145261 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTTTCCCAAGATAATTTCAGTACAgggattattattaaaacatgagCAGCATCAGAGTGACTTTATGAGAGTCACTTTCTGTGACAGTACGCTCATCTTACATGCagatcattttttgttttgtttgggaGAAAGAAATACATCCACTCTGGTCTGAAAACATCAAGTTGTACTCGTCTTGAGGAGGGGGATCATTTGGCGCACATCTGGAAAAACCATTTCCTTACATCTGGGAATGTGATTTTTTCCAAATAGACCATGAAAATTTCATGAGAGCTTTGTAACCATGTTTGTGGACTAAAGCTCATGGAGATATTGTtagtgtatatatgagtggagAATGTCAGTGgcatttaattatgtttttatatacagatcATTAGTACAATTtgatatgtttaatgttttaatttgtgATGAAATACTtatctgtaaaaataaagaCCCAACACCATACTGacacatatttttaaagtttagGAACCAGACTGGTGTAAATGAAATTTGGGGGGAAAAGTCATATCAAATAAAAGCTCATTAGAAGATCTATCACTGTCAAATACAAACCTTTATCAAAACTCAAAACTGTCATGTACGCTTATGTAATATATAGAGATCACACTctccacacttttttttgtcctagTCCTTCCTCTCCATGGTTCAGTGtcattcctcctctctcctgcAGGTGTGCTGTAGAGCAGGGTGGCACATCCAGAGAGCTGGACACCATTCCCGGACCCTCACTCTTGCCtgttccttgtgtgtgtgagtgtttgtggaTACAAGAATGGCAGGGTTTAATCAGTCATCTTCACTGCTCTGGACTTACCTCTGTGTGGCCATGCTGGCTCTTCTGGCTGGTGTGTGTCTGGGAGGATCTGATTCACCCCGTGGCGTCTCCTTACCTTTTGTGTTCGACCTGAAAGCAGTGTGTGATCCACCATGCAGACATGCTGGGATCTGTATCCGAAACAACACCTGCTTGTGCTCACGGGGCTACGAAGGAGAGACCTGCCAGTATGCTAACTGCGAGCCAAAGTGTAAAAACGGGGGTGAATGTCTCCGACCTGGAAAGTGCAGATGTCCTCCAGGACTTGGTGGAAAATATTGTGAAAAAGTTGCATGTGATGGTGGCTGCTGGAATGGTGGAGAATGCGTTGCAGTGAACGGGCAGGCCAAGTGCATCTGTCCCTCCAGCTGGACTGGATCCAAATGTCAAGAAGCAATCTGTCCTCAGGGTTGCCAGAATGGAGGCAGCTGTGTGGCTCCAGGAATCTGCAGCTGTCCAGAGGGATGGCTGGGGGGAGCCTGTCACATCGCTGTGTGTAAGAAGCCGTGTCTGAATGGTGGGAAATGCGTGTCTCCAGACAAATGTCGCTGTCGCACTCCGTTCTCCGGCCCTCAGTGCGAGGACAGAAAAAAACTCTTCTGATCTCAGCACTTACACTCCCTCAGAGCTGGAGACTTGGCCAACATGGTGCTATTCATTTAAGTTTGTTCATTCACTTGtactttttacatttgtaaacaaattTGTTACATTATGTTATATGTATGCTGTGTGATTTtatgacattaaataaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269180 lncRNA downstream 229185 16912959 ~ 16913160 (-) True G227440
TU269142 lncRNA downstream 367270 16774853 ~ 16775075 (-) True G227405
TU269123 lncRNA downstream 419153 16717249 ~ 16723192 (-) True LOC117599111
XR_004579542.1 lncRNA downstream 420154 16717250 ~ 16722191 (-) False LOC117599111
TU269041 lncRNA downstream 498260 16643860 ~ 16644085 (-) True G227319
TU269369 lncRNA upstream 16250 17161511 ~ 17163585 (-) True G227589
TU269401 lncRNA upstream 93866 17239127 ~ 17239928 (-) False LOC113539242
TU269426 lncRNA upstream 141082 17286343 ~ 17307724 (-) True G227640
XR_004579543.1 lncRNA upstream 156802 17302063 ~ 17305362 (-) True LOC117599113
TU269561 lncRNA upstream 260687 17405948 ~ 17407225 (-) True G227755
XM_026935107.2 mRNA downstream 29085 17109523 ~ 17113260 (-) True si:dkey-30e9.6
XM_034310833.1 mRNA downstream 29100 17109523 ~ 17113245 (-) False si:dkey-30e9.6
XM_034310832.1 mRNA downstream 29110 17109523 ~ 17113235 (-) False si:dkey-30e9.6
XM_026934618.2 mRNA downstream 33284 17106590 ~ 17109061 (-) True arl4aa
XM_026935128.2 mRNA downstream 263604 16865182 ~ 16878741 (-) False LOC113539389
XM_026934865.2 mRNA upstream 1674 17146935 ~ 17155966 (-) True tmem106ba
XM_026934908.2 mRNA upstream 85495 17230756 ~ 17250154 (-) False LOC113539242
XM_026934906.2 mRNA upstream 85495 17230756 ~ 17250154 (-) False LOC113539242
XM_026934905.2 mRNA upstream 85495 17230756 ~ 17250154 (-) True LOC113539242
XM_034310383.1 mRNA upstream 117315 17262576 ~ 17275219 (-) True LOC113539359
TU268927 other downstream 778041 16363381 ~ 16364304 (-) False si:dkey-118k5.3
TU268923 other downstream 825000 16316651 ~ 16317345 (-) True G227205
TU268676 other downstream 977309 16119297 ~ 16165036 (-) False G226991
TU268481 other downstream 1297562 15812389 ~ 15844783 (-) True G226830
TU267049 other downstream 3773495 13367763 ~ 13368850 (-) True G225622
XR_003403925.1 other upstream 2069498 19214759 ~ 19214923 (-) True LOC113539409
TU270720 other upstream 2563054 19708315 ~ 19708841 (-) True G228758
trnae-cuc_28 other upstream 4205982 21351243 ~ 21351314 (-) True trnae-cuc_28
XR_004579494.1 other upstream 4605874 21751135 ~ 21811084 (-) True gdpd5b
XR_004579495.1 other upstream 4605874 21751135 ~ 21811083 (-) False gdpd5b

Expression Profile