RNA id: XM_026934876.2


Basic Information

Item Value
RNA id XM_026934876.2
length 2114
RNA type mRNA
GC content 0.39
exon number 5
gene id ap2s1
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 16108511 ~ 16116831 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCAGCTTCTTCAGGCCTCTAGCGTCCTATGTAGGGGAAATAACAGGTTAGCGGCACGAAAGGCCAGCCCATTGGAGGTCTTCCTCTTCAGACTAAATTTTTTATGTGCAGAGATACAGAAAGGTTGATTAAGTAGCTTTATTTAGCTAAATTTGAATACCGGAAATATCAAAAATGATTCGCTTCATTCTGATCCAAAACCGAGCAGGAAAAACCAGACTGGCCAAATGGTACATgcagtttgatgatgatgagaagCAGAAGCTCATTGAGGAGGTTCATGCTGTAGTGACTGTCCGAGATGCCAAACACACTAACTTTGTAGAGTTCAGGAACTTCAAGATTATCTACAGACGCTATGCTGgtctgtatttctgtatctgtgtgGATGTTACTGACAATAACCTGGCCTACCTGGAGGGCATTCATAACTTTGTGGAGGTCTTAAACGAATACTTCCACAATGTGTGTGAATTAGATTTGGTCTTCAATTTCTACAAGgtgtaCACGGTAGTAGACGAGATGTTCCTGGCTGGAGAGATTCGAGAAACAAGCCAGACGAAGGTCCTGAAGCAGCTGCTCATGCTGCAGTCACTGGAGTAGAGACGTCACTGAATCACAGCCATACACCaccgcagcagcagcaggatcCTCTCGAATCTGCTGAAAGCCAGTCTATATTGTTTCTGTGTATAGATGTTGTCACTGATATATATAACCCAACATTTCAGCCTCTTAAAGCTGTGCTATGTAAGATTTTAAGAGTGTGAGTGTTTAAAAGCTTTATGATACTGAGAAAGATGACTGAATGCAGTTGAAGAATGAAAAGCCTGGTATGAAAGCTTGCACCTGATTTCTTCAACTGCCTTTTCAGACATTCAGGTGtatgaataatgttttttttttttttttttcttttcccagtTAAGACCCAATTCAGTGATCCCTATCAATTCACTACAGGAGTATAAATGTTTTCAATGTCTCATAACACCTTACATAGTATAACTTTACAGTTTTTAAGTCTTGTAGGAAGGTCTCAAAATGGCACTGCCTATTTTGCTCTTTCTTGATGCATTCAGTTTATAATTCAATGAATTTCAAGATTGGACATGCATTTTTGTGAGGCCGCTGTAGTCAGAATTGTCTCAGTTTTTTTCTCCGGTTGAATTTTTATGTTGCAAGGTTAGAATTTTGCCACAAACGTGTGTGAACGATTTGTCCCTGcccattaacacattaacactaaaCTGCTGAATAACCAGCAGGATAAATAAAACTGGAATTTCTGATAAACTATTGGAGCCCTGTATAAAATCAtgtataaaaagaagaaaaacacactttcacaccatTAGTTCTGGGAAtttttgtattgtgtgtgtatatacattatatagctATATCTATCTCCATGTGTTTTAGGTCAATCATACAATCTGAAACTACGAGCTTCATTCCAGTAGGCAaatgtctctctgtttttgctTAGTTACCAGTACCAACATGCACACAGTCAAACCCAAACTGTTCAGCGTTAGCCCACTGGCTATATGAACATCTAAGACACCTTGAAGAAGTTGAGCTATTAGCAGTAATTGTGGCGTGTTTGCTGAATGAACAAAGGCACACAGTGATGGGGAGCTTGTTTAGCCAGCAAGGCTGAACAGATCTTACAGCACTCACAGGGAACATACACAACAAAAGACTGCATCTACTTTTTATCTCCAAATTCTGTGGCTCTGCTCCCAACTAGCgcttccatagcaacagctctgGTCAGCCTCGAGCCTCTTTGGACTGGTTTTCTGGATTCCGATTAAGCTTAGACCTGGACCATTACATGCAAGAAATAACCATTCCTTAGTACTTTTAGCTCTGGACTAGGCTTAATCAGAATCTCTGATTCTGCTCCATTACatgtttaaagtttttaatctgtcttaatttttatcttttcaatgtcatttttcattgttctttttgttttcatctgAAAGATATTATGCACTTGTCCTTGTGAGATTGCGGAGTGAAGgtaatgtgtttttattctttgttcAGATCAATATGTACccataaaaaaggaaagagaaataaaagtagCAAAATTA

Function

GO:

id name namespace
GO:0030100 regulation of endocytosis biological_process
GO:0006886 intracellular protein transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0048268 clathrin coat assembly biological_process
GO:0019886 antigen processing and presentation of exogenous peptide antigen via MHC class II biological_process
GO:0050690 regulation of defense response to virus by virus biological_process
GO:0048011 neurotrophin TRK receptor signaling pathway biological_process
GO:0007411 axon guidance biological_process
GO:0016032 viral process biological_process
GO:0042059 negative regulation of epidermal growth factor receptor signaling pathway biological_process
GO:0030122 AP-2 adaptor complex cellular_component
GO:0005829 cytosol cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K11827 AP2S1; AP-2 complex subunit sigma-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268688 lncRNA downstream 2145 16103733 ~ 16106366 (-) True G227002
XR_004579521.1 lncRNA downstream 16004 16091314 ~ 16092507 (-) True LOC117599083
TU268661 lncRNA downstream 77547 16030247 ~ 16030964 (-) True G226980
TU268660 lncRNA downstream 77843 16030247 ~ 16030668 (-) False G226980
TU268519 lncRNA downstream 262341 15818624 ~ 15846170 (-) False G226864
TU268677 lncRNA upstream 2466 16119297 ~ 16126802 (-) True G226991
TU268925 lncRNA upstream 200866 16317697 ~ 16317922 (-) True G227207
TU268928 lncRNA upstream 241505 16358336 ~ 16438387 (-) False G227210
TU268929 lncRNA upstream 320709 16437540 ~ 16438387 (-) True G227210
TU268955 lncRNA upstream 347105 16463936 ~ 16464136 (-) True G227233
XM_026934967.2 mRNA downstream 84520 16017085 ~ 16023991 (-) True ppm1na
XM_026934951.2 mRNA downstream 92915 16008281 ~ 16015596 (-) True LOC113539270
XM_026934953.2 mRNA downstream 104139 15972162 ~ 16004372 (-) True ptgir
XM_026934952.2 mRNA downstream 107968 15972162 ~ 16000543 (-) False ptgir
XM_026934879.2 mRNA downstream 159288 15940214 ~ 15949223 (-) False slc37a4a
XM_026935060.2 mRNA upstream 149747 16266578 ~ 16273540 (-) True tmem160
XM_034310657.1 mRNA upstream 163957 16280788 ~ 16309690 (-) False egln2
XM_026934806.2 mRNA upstream 163957 16280788 ~ 16307697 (-) True egln2
XM_026935120.2 mRNA upstream 203247 16320078 ~ 16328662 (-) True pitpnaa
XM_026934805.2 mRNA upstream 213097 16329928 ~ 16352988 (-) True slc43a2a
TU268481 other downstream 263728 15812389 ~ 15844783 (-) True G226830
TU267049 other downstream 2739661 13367763 ~ 13368850 (-) True G225622
XR_004579489.1 other downstream 3027651 13070136 ~ 13080860 (-) True wsb1
XR_004579509.1 other downstream 3100952 12940910 ~ 13007559 (-) True nf1a
TU264952 other downstream 5796024 10308060 ~ 10312487 (-) False LOC113533081
TU268676 other upstream 2466 16119297 ~ 16165036 (-) False G226991
TU268923 other upstream 199820 16316651 ~ 16317345 (-) True G227205
TU268927 other upstream 246550 16363381 ~ 16364304 (-) False si:dkey-118k5.3
XR_003403925.1 other upstream 3097928 19214759 ~ 19214923 (-) True LOC113539409
TU270720 other upstream 3591484 19708315 ~ 19708841 (-) True G228758

Expression Profile