RNA id: XM_034310588.1


Basic Information

Item Value
RNA id XM_034310588.1
length 4066
RNA type mRNA
GC content 0.50
exon number 22
gene id dhx16
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 17600050 ~ 17619892 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAGCACTTTTCCCCATCATCAGACCCCCTGCAGTGTGCCAGGCTGAGTCAGGTGCAGTGACTGGCTGggaagtgagacagagacagagacagagagagagagagacagagagagagacagagcagTGACCTCGGGATTATGGAGACCTTTATTTTGGCACGTGGGCACCAGGACCAACAGTAAACCGGAAGTAAATAACCCGGACGAAGGGGAAAGCGTGAGCAGCGAAGGCTAATCATTCAGCATGGCCAATCTGGAGCAGTGGGTCAACGACAGGCTCCATGACATCCTGGGCCTAAGTGACAGATATGTGGCGCAGTTTATGATCGGCCTGGCGCAGAAATCCTCCGCGCCACAGGACTTTGTGGCACGTCTGCAGCAGACCGGCACCATTGACATTGACCAGAGAGTAACTGCATTTGCTCAGGAGTTATACAACAAGGTTCCAAAGAAACAGGTTATCGAAAAACCATCAAGAGCCATCGAGCGACAGGTGATTGAGATCGAACGAAAGAACAGGACCTACACTCTGTTGGAGGACAGTGACAGCGATGGAGAGGCGTCCAGAGAAGGAGGGAACGAGAAGAAGAGCCGAGACAAGGACAGAGGAAAGAAGAGGAAGCATCTCAGGCAAAAAAGAGACGAAAGTCCCTTGTCGAGTGAGGAGGATGGAAAGAAGAGCAAATCATCTTCACATGAGGCAAAGAAAGCCCAGAAAGATGACGACGAGGAAGAGGAGtgggagaaggaggagagagaaagactgcaAGATTTGGAGGAGAGGGATGCCTTTGCAGAACGAGTGAagcagagagataaagagaagacGAGGCACATACTCGAGCGAAATGACAAAAAGGCCTATGAGGAGGCGCAGAAGAGACTGAAGATGGCTGAAgaagatcagaggagaatgCTGCCTGAGCTGCGGAAACAGTCACGGCGTGAGTACCTGCACAAACGTGAGCAGGAGAAGCTGGAAGATCTGGAGGCAGAGATTTTAGACGAGGAGTACCTTTTCTCTGGTGATAATCTCACCGAACGTGAGAAGAAAGACCTGGATTACAAGAAACAGATCAGAGACCTGGCTCAAGACTACAAGAAAGCCGGCGTgaaggagaaagaagagaggaaaaaccGCTACTACATGCCCGAGGAGATACGTAATAAAAATATTCCTCAGAGGGACATGGAGTTGGAGTTTGACGAGGGCCCCAAAGAGGGTGGAGGTGAGCAGGGGCGATGGGAGGAGGCACGGGTCGCCACAGCCACACTGCAGTTCGGGGCCAAAGAGGAACGAGAGCGGCGTctaaaagaggagaaagagaaataccAGCTAGTGCTCGAAGAGGACGAGATGATTAACTTTGTGAGCACTGCTATCACCATGAAAGGAACGCTCTCTGAAAAGGATCATGAACCTGAGCTCTCTcaggctgaaaaacagaagcagTCCATCCAGGAAGTGAGACGCAGCCTGCCCATATTTCCCTACAGAGATGACCTCCTCGCTGCCATCAGAGACCACCAGATCCTGGTTATCGAGGGTGAGACCGGCTCAGGCAAGACCACCCAGATTCCTCAGTACCTCATGGAAGACGGTTATACCAAAGGAGGGTTGAAGGTGGGGTGCACCCAGCCTCGCAGAGTAGCAGCTATGTCTGTAGCAGCCAGAGTGGCTCAGGAAGTGTCAGTGAAGCTGGGGAATGAGGTGGGTTACAGTATCCGGTTTGAGGACTGCACGTCAGAACGCACTGTGCTCAAGTACATGACTGATGGCATGTTGTTGAGAGAGTTCCTCACCGAGCCCGACTTGGCTAGTTATAGTGTGATCATCATTGATGAGGCTCACGAGAGGacattacacacagacatactgTTTGGGCTGATCAAAGACATCGCACGCTTCCGGCCCGACCTGAAAGTGCTGGTGGCTAGTGCTACTCTGGACACGGAGcgtttctccagtttcttcgATGATGCTCCTGTGTTTAGGATCCCGGGCCGCAGGTTTCCTGTCGACATCTACTACACAAAGGCTCCTGAGGCCGATTATCTGGAGGCGTGTGTGGTATCGGTACTACAGATTCATGTGACACAGTCTCCTGGAGACATCCTTGTGTTCCTCACAGGACAGGAAGAGATTGAGGCATGCTGTGAGCTCCTGCAGGAGAGGTGTAGGAGGCTTGGCTCAAAGATCTCTGAGCTTATTGTCCTCCCTATCTACGCCAACCTGCCCTCAGACATGCAAGCTAAGATTTTTAACCCCACACCACCTGGAGCTCGCAAGGTTGTGGTAGCCACAAACATAGCAGAAACCTCTCTCACCATTGATGGCATCATCTATGTGATTGACCCTGGCTTCTGCAAACAGAAGAGCTACAATGCCCGAACAGGGATGGAGTCTCTGATTGTCACACCATGCTCACGGGCCTCAGCCAATCAGCGGGCAGGCCGAGCAGGTCGGGTAGCTGCAGGCAAGTGTTTCAGGCTCTACACAGCCTGGGCCTTCAAACACGAGATGGAGGAAACCACAGTTCCTGAAATCCAGAGGACCAACCTGGGCAATGTTGTCCTGCTCCTGAAGAGTCTGGGCATAAATGACCTCATCCATTTTGACTTCATGGACCCTCCTCCACACGAAACCCTGGTGCTGGCTCTTGAGCAGCTCTACGCCCTGGGTGCCCTTAACCACCTCGGAGAACTCACTAAGCTGGGCAGGAGGATGGCTGAGCTGCCTGTCGACCCCATGCTGAGTAAAATGATCTTGGCCTCTGAACAGTATAAGTGCTCAGAGGAGGTGTTGACTATCGCCGCCATGCTGTCAGTCAACAACTCCATTTTCTACAGGCCAAAAGACAAAGTGGTGCATGCGGACAATGCCCGAATGAACTTTGTGGTGCCAGGAGGAGATCATCTGATGCTCCACAATGTTTACTCTCAGTGGGTGGAGAGTGGTTATTCCACACAGTGGTGTTTTGAAAACTTTATCCAGTTTCGCTCGATGAGGCGGGCGCGTGACGTGAGGGAGCAGCTGGAGGGGCTGATGGAGAGAATCGAAGTGGAATTGTGCAGTGCTAACGGTGACAACGTCTGCATCCGCAAGGCAATCACAGCAGGTTATTTCTACCACACGTCCCGTCTCTCTAAGGGAGGCTACAAAACTGTGAAGCACCAGCAGACGGTGTATGTGCACCCCAACAGCTCACTGTTTGAGGAACAGCCACGCTGGCTCATCTACCATGAGCTGGTCTTCACCACCAAGGAGTTCATGAGACAGGTGATTGAGATAGAAAGCAGCTGGCTCTTGGAGGTGGCTCCTCACTACTACAAAAGCAAAGAGCTGGAAGACAGCAGCAGTAAGAAAATGCCTCGCAAACAGGGCAAAGCTCGGGAGGAGCTCGGCTGATTTCGGCGAACAGTCTGTTGTCTGCCGTTTCTCATGCAGGCCTCAGCTCATCTGGCCCAACAGAGACTGAAAGAAGGAGAGATTGAGAACGATTGCTGTTTAGGATGGGAGCTCTGTGGTCAAAATTCTGTTTGAAGCTATTGGCAATTGCTCTTAATTAGTGTGTTTTTAGAGTGGAGGTAATCAAAGTATCTCGATTTGAAACGTGTTAGATATGTTTGAGTTGGTATTAAACCTCTACTCCAGTGGCAGCgttaaaataatatcaatacAGCAAGAAATAATGACTACAGAAGGATGGGTTTTTACAGCTTGTTTTTGAGAGGAAGAACTCTacctgtttcttttattttttttgttggtaaacatattgttttataattgtgactggaaatgtttttcatgctcatgatTATAGACCAATAAGCAATATTGCCAGCCCATCAAAGGAATGACCGGCATGTTATCTTGAGGCTGTTACTTTGAGCTAGATTGTTCCACAGCAGATAGAGGGTGTGTACCAAATTACTGCACAGTCATTTCCACATATGGGCCAAATATGTAGATATCCACTTTTTACATATCAAAGCAAGCATTTGATGTTTCCGGATCTTCTGTACTGATGTATTTgatgataaatatatttttgaatacAA

Function

GO:

id name namespace
GO:0035987 endodermal cell differentiation biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269607 lncRNA downstream 110618 17486631 ~ 17489432 (-) False G227786
TU269609 lncRNA downstream 110618 17486631 ~ 17489432 (-) True G227786
TU269582 lncRNA downstream 161464 17434055 ~ 17438586 (-) False psenen
TU269583 lncRNA downstream 161464 17434055 ~ 17438586 (-) True psenen
TU269561 lncRNA downstream 192825 17405948 ~ 17407225 (-) True G227755
TU270036 lncRNA upstream 454704 18074596 ~ 18074799 (-) True G228131
TU270092 lncRNA upstream 768616 18388508 ~ 18392636 (-) True rwdd3
TU270099 lncRNA upstream 797562 18417454 ~ 18418564 (-) True G228188
TU270408 lncRNA upstream 941545 18561437 ~ 18618921 (-) False pxylp1
TU270432 lncRNA upstream 986035 18605927 ~ 18608241 (-) True G228483
XM_026934621.2 mRNA downstream 611 17594191 ~ 17599439 (-) True rnf183
XM_026935118.2 mRNA downstream 10829 17583339 ~ 17589221 (-) True mgat1a
XM_026935119.2 mRNA downstream 11526 17583339 ~ 17588524 (-) False mgat1a
XM_026934965.2 mRNA downstream 19504 17570528 ~ 17580546 (-) True sh3bp5la
XM_026935078.2 mRNA downstream 31503 17518007 ~ 17568547 (-) True gabbr1a
XM_026934957.2 mRNA upstream 25505 17645397 ~ 17674664 (-) True niban1b
XM_026934949.2 mRNA upstream 65985 17685877 ~ 17691354 (-) True arpc5a
XM_026934914.2 mRNA upstream 74847 17694739 ~ 17709619 (-) True pla2g4aa
XM_026934600.2 mRNA upstream 139765 17759657 ~ 17772060 (-) False odr4
XM_026934598.2 mRNA upstream 139765 17759657 ~ 17772060 (-) True odr4
TU268927 other downstream 1235746 16363381 ~ 16364304 (-) False si:dkey-118k5.3
TU268923 other downstream 1282705 16316651 ~ 16317345 (-) True G227205
TU268676 other downstream 1435014 16119297 ~ 16165036 (-) False G226991
TU268481 other downstream 1755267 15812389 ~ 15844783 (-) True G226830
TU267049 other downstream 4231200 13367763 ~ 13368850 (-) True G225622
XR_003403925.1 other upstream 1594867 19214759 ~ 19214923 (-) True LOC113539409
TU270720 other upstream 2088423 19708315 ~ 19708841 (-) True G228758
trnae-cuc_28 other upstream 3731351 21351243 ~ 21351314 (-) True trnae-cuc_28
XR_004579494.1 other upstream 4131243 21751135 ~ 21811084 (-) True gdpd5b
XR_004579495.1 other upstream 4131243 21751135 ~ 21811083 (-) False gdpd5b

Expression Profile