RNA id: XM_034310839.1


Basic Information

Item Value
RNA id XM_034310839.1
length 1428
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC113539356
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 18402727 ~ 18422483 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAACACTAGTGTCTTCACATGCAGCCATCTGCAGCCACACAATAGATCCTTTTTGTTTGGCCTTGATTTCGAAGAGGAAAAACTGAGTGCAAGTCTGACGATGAATCAGGAACCTCCAGGACGAGGTGGCTATGGAGCCTCTGAGCATCATTGTGGTGCTGGTTACTCTCAGCAGTTTCCTCATCTCTCAGTGGATCTTTCATGTCGCATGTCCATGGCTGTCCGAGCGCCTCATTCCAGCttttctcacactcacacacatgcagaggaCAGAGTGGAGCTCCAGGGCCGTCTCCACAGTCCATGCTTTGGTCGTGGGACTTTTTTGTCTCTACATATTACTTTTTGATGAAGTTATCAAGAAAGATCCTGTTTGGGGAGATCCAACACTGGTGAAACTGAATGTGGGCATAACCGCAGGCTACCTCATCTCAGatCTGCTGCTTATGATCTACTTCTGGGATTTCATAGGAGAGAAGTATTTTGTCATACACCACCTTGCTGCTCTTTATGCCTATTATTATGTACTGagtcaGGGTATATTGCCCTATTTTGCCAATTTCCGTCTACTTGCTGAATTTTCCACCCCCTTCGTGAACCAGAGGTGGTTTCTTCAGGTTCTGGGCTACCACAAGCTTTCCAAACCCAGCCTTGTTAATGGAGTAGCCATGGCGTCCTCCTTTTTCCTGGTGAGGATCGCAGTCATTCCAGTCTACTACAGCcaaatgtacagtgtgtatggCACTGAGGCTTTCTACAGACTCACACCGGGGGCTCGCAGTGCGTGGATCCTCTGTAGCCTCTGCCTTGACATCATGAACATCATGTGGATGCGCAAGATCCTTCGGGGCTGCCTCAAAGTTCTACGCTCCAGCAGATCCCAAAAACCAGTGACAGAATTGAAGAGCCCAAAAATTGACTGAGACTGAGAAGGTTAAGCCTAGTCAACTTTTACTGGTGTCTCATCCTTATAAACAAATACtgtgatattaaatattaagccTCCAGGACCATGAGGGAGCATGCAAGACAATACAGGATCTCTATACATGGGCCTAAAGAGCAAATAGCAAGCACTTTGTAGGTGTACAATTACTGACAGTAGCCCAAGTGTCAACATGAACGAACTGTCAGTCCTCCTCTCCTCTACTCATCAATGGAAATAAATGACAAGACCTTACATTTTCAGTACAGTTCTTCAACAAATCACTTGTCTGTGTCCCAGATAGAAACTGTTAAATGTTTCCACACTGCTGTTCAGCTGCTCAATCTATTTAAACATGTCTGCACTCaggagagcaaagcaaacaaacagtgttttaaaatcacTTTACAATTAACTggcattaacattatttgtaaagtgttagactTGACATTTCATTTGTAGCCCTGTTTATTTTTGGTCAaaactttcagtttttttct

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270092 lncRNA downstream 10091 18388508 ~ 18392636 (-) True rwdd3
TU270036 lncRNA downstream 327928 18074596 ~ 18074799 (-) True G228131
TU269607 lncRNA downstream 913295 17486631 ~ 17489432 (-) False G227786
TU269609 lncRNA downstream 913295 17486631 ~ 17489432 (-) True G227786
TU269583 lncRNA downstream 964141 17434055 ~ 17438586 (-) True psenen
TU270408 lncRNA upstream 138954 18561437 ~ 18618921 (-) False pxylp1
TU270432 lncRNA upstream 183444 18605927 ~ 18608241 (-) True G228483
TU270520 lncRNA upstream 588941 19011424 ~ 19012679 (-) True G228564
TU270593 lncRNA upstream 926156 19348639 ~ 19348839 (-) True G228635
TU270655 lncRNA upstream 1142487 19564970 ~ 19565203 (-) True G228697
XM_026934925.2 mRNA downstream 2641 18393167 ~ 18400086 (-) True LOC113539254
XM_026934950.2 mRNA downstream 9982 18389112 ~ 18392745 (-) False rwdd3
XM_034310633.1 mRNA downstream 56836 18324540 ~ 18345891 (-) True ptbp2b
XM_026934718.2 mRNA downstream 367753 18006444 ~ 18034974 (-) True plppr4a
XM_026934749.2 mRNA downstream 417178 17975631 ~ 17985549 (-) False palmda
XM_026934594.2 mRNA upstream 138939 18561422 ~ 18575931 (-) True pxylp1
XM_026934596.2 mRNA upstream 138939 18561422 ~ 18570646 (-) False pxylp1
XM_034310712.1 mRNA upstream 228613 18651096 ~ 18872252 (-) True LOC113539090
XM_034310713.1 mRNA upstream 228613 18651096 ~ 18800417 (-) False LOC113539090
XM_026934772.2 mRNA upstream 461902 18884385 ~ 18948975 (-) False aplp1
TU268927 other downstream 2038423 16363381 ~ 16364304 (-) False si:dkey-118k5.3
TU268923 other downstream 2085382 16316651 ~ 16317345 (-) True G227205
TU268676 other downstream 2237691 16119297 ~ 16165036 (-) False G226991
TU268481 other downstream 2557944 15812389 ~ 15844783 (-) True G226830
TU267049 other downstream 5033877 13367763 ~ 13368850 (-) True G225622
XR_003403925.1 other upstream 792276 19214759 ~ 19214923 (-) True LOC113539409
TU270720 other upstream 1285832 19708315 ~ 19708841 (-) True G228758
trnae-cuc_28 other upstream 2928760 21351243 ~ 21351314 (-) True trnae-cuc_28
XR_004579494.1 other upstream 3328652 21751135 ~ 21811084 (-) True gdpd5b
XR_004579495.1 other upstream 3328652 21751135 ~ 21811083 (-) False gdpd5b

Expression Profile