RNA id: XM_026935080.2


Basic Information

Item Value
RNA id XM_026935080.2
length 2776
RNA type mRNA
GC content 0.49
exon number 20
gene id gabbr1a
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 17518007 ~ 17568547 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCCAGTAGAAGGCACTGTGGTCCATTACAGCTGTCACGCTGGCTTCCTGTTGGAGGGCAGAAATATTTCCCACTGCACCAAGCAGGGCAACTGGGACTCGCCAAAACCACTGTGTATTTGTCTTTATCTTGCATTCTGTTTTCTTTCCATACCTGCTCTCAGATGACAGAAATTATACAGGGAAGAAGAAGCTGTACATCGGCGCGCTGTTCCCCATGAGCGGAGGATGGCCTGGGGGACAGGCATGTCTGCCCGCCGCGCAGATGGCACTGGAGCTCGTCAACAACCGCACTGACATCCTGCCCGACTACGAGCTCGAGCTCATCTATTACGACAGCATGtgtgACCCTGGGGAAGCAACAAAGCTCCTGTATGACCTCCTCTACACAGAGCCGATAAAAATCGTACTGATGCCAGGATGCAGCTCTGTTTCTACACTAGTGGCTGAAGCAGCTCGCATGTGGAACCTTATAGTGTTCTCCTATGGCTCCAGCTCTCCAGCACTGTCCAACAGGCAACGTTTCCCGACATTCTTCCGCACACATCCCTCCGCGACGCTGCATAACCCCACACGTGTGCGCCTCTTCCAGAAGTGGAATTGGAACAAGATCGCCACAATCCAGCAAACAACAGAAGTCTTCACTTCGACATTGGATGATCTGGAACAGAGGGTGAAGGAAGCTGGTATTGAGATAAGCGTGAGACAGAGTTTCCTCACTGATCCCGCCGTGGCTGTCAAGAACTTGAAGCGTCAAGATGCCAGGATCATTGTTGGCCTTTTCTATGAGACTGAAGCAAGAAAAGTCTTTTGTGAGGTCTATAAGGAGAAACTCTATGGAAAGAAGTATGTCTGGTTTCTCATTGGCTGGTACGCAGACAACTGGTTTAAAATCAAAGACCCAGCCATTAACTGCACCATGGAGCAGATGACAGAAGCTGTGGAGGGACACGTCACTACAGAGATCGTCATGCTGAACCCCGAGACTGTTCGTGGTGCCTCCAACCTGACATCCCAGGAGTTTCTGGCACAGCTCATGTCTCGTCTTGGTGGGAAGAACCCTGAGGAGACAGGGGGTTTTCAAGAGGCTCCCTTGGCATATGATGCAGTGTGGGCTCTTGCTTTGGCTCTTAATAAGACGGTTGCACCGCTACAAGCTAAAGGAAGAAGACTGGAGGACTTTAATTACAACAACCAGGACATCACAGCAGAGATATATCGGGCGCTTAATACCAGCTCATTTGAAGGAGTATCAGGCCATGTAGTCTTCGATGCTCAGGGATCCAGAATGGCTTGGACACTCATAGAACAACTGCAAGGTGGGAGTTACAAGAAGATTGGATACTATGACAGCTCAAAAGGCAATCTTTCGTGGTACGGAAATGACAAGTGGatagGCGGAGACCCTCCAAGAGATCAGACGGTGGTGTTAGAAGAATTTCGCTTCCTTTCCCAGAAGCTGTTTGTTTCTGTATCTGTGTTTGCTGGCCTGGGAATCATCTTGGGCATCGTTTGTCTCACATTCAACATCTACAACAGCAACATTCGGTACATCCAGAACTCTCAGCCATACCTGAATAACATTACAGCTGTGGGTTGTGTACTTGCCCTGGCTGCTGTTTTTCCACTGGGCATTGACGGGCTTCATGTAGACAGATCTCGGTTTCCCGTGGTGTGTCAGTTCCGCCTGTGGCTGCTGGGCCTGGGGTTCAGTTTGGCTTATGGCAGCATGTTCACTAAGATTTGGTGGGTTCATACTGTGTTCACTAAGAAggatgagaaaaaagagaagaggaagCATTTGGAACCCTGGAAGCTCTACGCAACAGTAGGAGTTTTACTGGCCATTGACGTCCTGTCTCTGATGATCTGGCAGATTGTTGACCCTTTGCACATTACCTTAGAGAAGTTCACTAAAGAAGATCCTAAAGGAGATCTGGATTTTTTGATTCAGCCTGTACTTGAGCACTGCAGCTCAGAGAAGATGAACACATGGCTTGGGGTTGTGTATGGCTATAAGGGCCTGCTCCTGCTGTTGGGCATCTTCCTGGCCTATGAGACCAAATCCATCTCCACTGAGAAGATTAATGACCACCGAGCTGTTGGCATGGCTATCTACAACGTAGCTGTTCTGTGTATGATCACAGCTCCTGTGACGATGATTCTCTCCTCTCAGCAGGATGCCTCTTTTGCCTTTGCCTCTCTTGCTATAGTGTTCTCAGTCTACATCACTTTGGTGGTGCTCTTTGTGCCCAAGATGCGGCGTTTAATCATGCGTGGGGAGTGGCAGTCTGAGCAGCAGGACACACTGAAGACAGGATCGTCTACCAATAACAATGATGAAGAAAAATCAAGGCAGCTCGAGAGAGAGAATCAAGAACTCCAGAAGATCATTCAGGAGaAAGAGGAACGTGTAACAGAACTGCGAAACCAATTAGCAGAACGTCAGGCTCTCCGGGCTCGGAAACCAGTATCTTgtcagaaccagaaccagaaccacaGCGCCCCCCCTCTGGCTTTATCTGAGCCTCCTGTCTACTCGCCTGGCACAGAGCAGCACTCTGTGCCTCCCTCCTTCTCCAACAATTCCACCCTCTACCAGGGAGAAGGGAAGCTCAGCCGGAATCACTGCCACAACAGCCGACTGCCTCTTCTCTACAAATGAACTGGGCAGAACTGGAGATAAACAGGCTGTGTGTTGATGAGTCCATGTGAGTTAACAAGAGTGTAGTTCAAcatctttgtttttaatgactCTATCActccagtctttttt

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004965 G protein-coupled GABA receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269607 lncRNA downstream 28575 17486631 ~ 17489432 (-) False G227786
TU269609 lncRNA downstream 28575 17486631 ~ 17489432 (-) True G227786
TU269582 lncRNA downstream 79421 17434055 ~ 17438586 (-) False psenen
TU269583 lncRNA downstream 79421 17434055 ~ 17438586 (-) True psenen
TU269561 lncRNA downstream 110782 17405948 ~ 17407225 (-) True G227755
TU270036 lncRNA upstream 512081 18074596 ~ 18074799 (-) True G228131
TU270092 lncRNA upstream 825993 18388508 ~ 18392636 (-) True rwdd3
TU270099 lncRNA upstream 854939 18417454 ~ 18418564 (-) True G228188
TU270408 lncRNA upstream 998922 18561437 ~ 18618921 (-) False pxylp1
TU270432 lncRNA upstream 1043412 18605927 ~ 18608241 (-) True G228483
XM_026934584.2 mRNA downstream 79393 17434917 ~ 17438614 (-) False psenen
XM_026934585.2 mRNA downstream 79537 17434917 ~ 17438470 (-) False psenen
XM_026934913.2 mRNA downstream 85691 17429752 ~ 17432316 (-) True hspb6
XM_026934910.2 mRNA downstream 97546 17414024 ~ 17420461 (-) False lin37
XM_026934965.2 mRNA upstream 8013 17570528 ~ 17580546 (-) True sh3bp5la
XM_026935118.2 mRNA upstream 20824 17583339 ~ 17589221 (-) True mgat1a
XM_026935119.2 mRNA upstream 20824 17583339 ~ 17588524 (-) False mgat1a
XM_026934621.2 mRNA upstream 31676 17594191 ~ 17599439 (-) True rnf183
XM_034310588.1 mRNA upstream 37535 17600050 ~ 17619892 (-) False dhx16
TU268927 other downstream 1153703 16363381 ~ 16364304 (-) False si:dkey-118k5.3
TU268923 other downstream 1200662 16316651 ~ 16317345 (-) True G227205
TU268676 other downstream 1352971 16119297 ~ 16165036 (-) False G226991
TU268481 other downstream 1673224 15812389 ~ 15844783 (-) True G226830
TU267049 other downstream 4149157 13367763 ~ 13368850 (-) True G225622
XR_003403925.1 other upstream 1652244 19214759 ~ 19214923 (-) True LOC113539409
TU270720 other upstream 2145800 19708315 ~ 19708841 (-) True G228758
trnae-cuc_28 other upstream 3788728 21351243 ~ 21351314 (-) True trnae-cuc_28
XR_004579494.1 other upstream 4188620 21751135 ~ 21811084 (-) True gdpd5b
XR_004579495.1 other upstream 4188620 21751135 ~ 21811083 (-) False gdpd5b

Expression Profile