RNA id: XM_026943283.2


Basic Information

Item Value
RNA id XM_026943283.2
length 4035
RNA type mRNA
GC content 0.52
exon number 20
gene id chrd
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 4480547 ~ 4491680 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTTAACCGCTTTACCTCGTTTTGCGCTTAACCCTGTTTCAGCACAGAGCTCTTgaacacccaaaaaaaaaagttaggtTTGATTTATTATACTTTTAGTGCAGGTTCCGGTTTTCTGGCGTGTTTGAGCACCgagacagagaagaagagaagagagagaaaagaggaaaagttcattttttccttccctTTAGCCGACTaacggaggaggaggaggaggtggaggaaggATGGAGAGTGTGCGCGTGCTGCTGGGCGCCGTGCTGTCCGTGCTGCTGAGCTGCTCGCGCTTACCGTCGGCGGAGGCCTCGCGCATGAAGTCCGCGGCCGCGCTGCCCATCCAGCCCGAGAGAGAACCGGTTCCGTCCAAAGGAGTGTCGGGATGCTCGTTCGGAGGGAGGTTCTATTCTCTGGAGGACACGTGGCATCCAGACCTCGGGGATCCTTTTGGTGTTATGCACTGCGTCATGTGTCACTGTGAACcgcagagGAGTCGACGTGGAAAAGTGTTCGGGAAGGTGAGCTGTAAGAACATAAAGCAGGACTGTCCCGAACCCAGCTGTGAGGAACCGGTCCTGCTGCCGGGACACTGCTGTAAAACATGCCctaaaggTGAATCAGACAGAAAGTCCACAGAGACGCTTTTCGATGGTTTCGAGTTTTTCCAGGAGAAAGATGACGATCTTCACAAGTCCTACAATGACAGATCATATCTCAGCTCAGAACACATGAACGGGGGAGACAGCaagacagATTTTGTGGCGTTGTTGACCGGTGTGACGGATTCGTGGTTGCCGAGTTCCAGTGGAGTCGCACGAGCTCGCTTCACACTGACCAAGACCAACCTCGCCTTCTCCATCACATACcagagGATTAACCGGCCAAGTGTCATCATGTTTCTCGACTTGGAGGGAAACACAGCGTTCCAGTTCAGAGTTCCACGAGGCGACTCAGacatgatctgTGGAATCTGGAGGAACCTGCCCAAATCTCACATGCGTCAGCTTCAGGACGAGCAGCTTCGTGTGTCCATGATTGTGATGGACGGCAGGCGAGAGGAGATTCAGGGCAAAATCATCAAACACAGAGCCCTGTTTGCAGAGACGTTCAGCGCCACGCTGACGTCGGAGGAGGAGAATTCCGGGATGGGAGGAATCGCCATGGTGACGCTGAGTGACACCGAGAACAACCTGCACTTCGTCCTGCTTATGAGGGGCATCGTCCAGGCTTCAGAGAGtgCGTCGCTGCTCGTACCCATCCAAGTCAGACTGCAGTATCGACAGCACACGCTGCGGGAGATCTACACTAACGTTACTGCTCACgacgCCGACTTCGCCGAGGTTCTGTCAGACCTGAACAGTCGCGAGCTCTTCTGGCTTTCACGCGGACAGCTGCAGATTGTCGTGGAAACGCAAGGCCGTGACCCCAGGCACATCTCAGGCTACATCACCGGCAAGAGATCATGTGACAcacTACAGAGCGTGATGTCCAGTGGCGACGCTTTGACCCCTGGGAAAACAGGTGGAGTCGGGTCAGCCGTCTTTAATCTCCATGACAATGGCACCCTTGACTACCAGATTCAGGTGGAGGGCATGTCCAGCACGGTGGTGGGCGTGACCATCGAGATGAAGCCGCGGAGACGGAGCAAGCGCAGTGTGCTGTATGACATGACGGGCGAGTTTGTGGTGAGTGGGCGTGGCGGGCGGGCCGTTGGCTCATATGGACGCATGGAGGCACGGCACATTCATATGCTGCTGCAGAATGAGCTGTTTATCAACATCGGCACGACGGAGAATCCTGAGGGGGAACTGCGGGGACAGATCCGTACACTCCTGTACAACGGCCTGGAGTCCCACCGACATgagCTGCCGTTCCCTCTGGCCGGTCAGTTCGTGTCTCCGCCCGTGAGGACAGGAGCAGGTGGACATGCCTGGGTGACGGTGGACAAGCACTGCCACCTGCACTATGAGATCGTAGTGAACGGACTGGGGAAAGGAGACGAGGCCACGATGAACGCTCACCTGCACGGCCTGGCTGAGATCGGAGAGATGGACGAGTTGGCACACACTGGTCCCAAACGCCTACTCACTGGCTTCTATGGAGAACAGgctCAGGGGGTTTTGAAGGATCTGAGTGTTGAGTTGTTGCAGCATTTGGACAAAGGCACAGCATTCATCCAAGTCAGCACCAAGATGAATCCACGGGGAGAGATACGGGGGCGAATCCATGTCCCTAACAGCTGCGAGCAAGGCTCCCGGGCCGAGGCTGTGGTCGACGAGGCTGAGTTTGACGACGTGGTGTTTGTCCGCGACCCAGAAGCCTTCAAAAAAGATCCGCTGGCATGTTTCTTCGAAGGCGAACGTCACGCTCACGGCTCACGCTGGACGCCACACTACAACTCCTGCTTCACCTGCACGTGCCAGAAGAAGACGGTTATCTGTGACCCAGTCATGTGTCCTGCGCTGACGTGCCCGCACACCTACCAGCCTGAGGACAAGTGCTGCCCCGAGTGCGACGAGAGAAAAGTGCCAAAAGAGATCACGTCTGCGGAGAGAGTTGAGGAGCATCCAGAAGGGTGTTATTTCGAAGGCGATCAGAAGATGCACGCACCTGGAACTGTGTGGCATCCGTTTGTGCCGCCTTTCGGCTACATCAAGTGCGCTGTGTGCACCTGCAAGGGCTCTACGGGAGAAGTGCACTGTGAGAAAGTCACCTGTCCCCCACTCACCTGCAGCCGACCAATCAGACGCAACCCCTCGGACTGCTGTAAGGAGTGTCCGGCTGAGGACACGCCCCTCCTGGAGGAGGGGGAGATGATGCAGGGGGACGGGCCGCGACACTGCAAGTTCGGGAAAAACTACTATCAGAACAGCGAGAACTGGCATCCTCGTGTGCCATTGGTTGGGGAGATGAAGTGCATCACATGCTGGTGTGACCATGGCGTCACAAAGTGTCAGAGGAAACAGTGTCCACTACTGAGCTGCAGTAATATTACACGAAGAGAGGGCAAGTGCTGCCCTGAGtgtgcagATGAGTTcaccaaagaagaagaaatgatgaagatggaggagaaaaagaagagctGGAGGCACTGACCTGCATGTCCTGTCCCATTTTTGTCCTCAgccccatccatccatctatccatccttcCGTCCGTCcgtctgcctgtctgtccatccctcTCTCGAGTGGGCCACTGGCAAACTGTTCGAGAAGTGACAGAAACACGAgcggagaaagagagaaagggaaaacgTGGAAATAAACAAGCCAGTGAGGCAGAACAAGAGCCTCTGAGGGAAAACTGTTGAAggagaaagaacaaagaaaagaaggaaaaaggacCAAGCTGCTGGATAAAATTCCTTTGTgactgactttttaaaaatggaatgcctttttttttgcttaatttttgtACTTCTTGGACTTGGAGCAAACTTCAGtcaaacagagacacacatgcTATACATTTTCTTGACGATGGGTGGTATgatgggctgtgtgtgtgtgtgtgtgtgagcatgtgtgttaAATTGGCGAGGTGCAGGCAGCCGTAAAGTCATTGGGTGGCAATGTGAGTgaatgtaaaacacacacatgtgcccACACATGcgcctacacacatacacacacataaacacacacacgcacatacacacacataaattccAATATGCTTCCAGAAAAATTCAGCATCGTACTGTGTTTCTACAGTGTTCATCATCCTTATctttaattaatatgcaaatttaaGTCTCATCTCAGCCAATAAGCCACGCTGTCTCATTTTATTCTACTATAACGTGCCTGATTGGAGATTTTGCTCCTTGAGTGAAAAAGATTGACTAATTAAAGGGCGGAGCTCCGAGTTTGTTCATATTGGCTTCACCCGTTTGTGTTGCACCTGACGTCGTTacctgtctgttttgtttttcaacccttttgtgtaatattttataattatttgctGACTGATTATTATGATGAATattgtatttcatatttattgagTGCGCtggaaaaaatca

Function

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:0043049 otic placode formation biological_process
GO:0010159 specification of animal organ position biological_process
GO:0048264 determination of ventral identity biological_process
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0009948 anterior/posterior axis specification biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0035143 caudal fin morphogenesis biological_process
GO:0035162 embryonic hemopoiesis biological_process
GO:0060030 dorsal convergence biological_process
GO:0001947 heart looping biological_process
GO:0005576 extracellular region cellular_component
GO:0005515 protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260838 lncRNA downstream 88311 4389272 ~ 4392236 (-) True G220267
TU260852 lncRNA downstream 155402 4281004 ~ 4325145 (-) False G220278
TU260836 lncRNA downstream 162926 4314866 ~ 4317621 (-) True G220266
TU260867 lncRNA downstream 175101 4304359 ~ 4305446 (-) True G220290
TU260851 lncRNA downstream 198087 4281004 ~ 4282460 (-) True G220278
TU260946 lncRNA upstream 72043 4563720 ~ 4564128 (-) True G220359
TU260949 lncRNA upstream 97667 4589344 ~ 4589553 (-) True G220362
TU261237 lncRNA upstream 124605 4616282 ~ 4616632 (-) True G220621
TU261315 lncRNA upstream 383967 4875644 ~ 4883440 (-) True G220690
TU261318 lncRNA upstream 396229 4887906 ~ 4888446 (-) True G220693
XM_034310571.1 mRNA downstream 19840 4392776 ~ 4460707 (-) False LOC113544498
XM_034310570.1 mRNA downstream 19840 4392776 ~ 4460707 (-) True LOC113544498
XM_034310573.1 mRNA downstream 19863 4392776 ~ 4460684 (-) False LOC113544498
XM_034310572.1 mRNA downstream 19867 4392776 ~ 4460680 (-) False LOC113544498
XM_034310535.1 mRNA downstream 143649 4320152 ~ 4336898 (-) False LOC113544495
XM_026943489.2 mRNA upstream 10104 4501781 ~ 4525814 (-) False LOC113544596
XM_034310760.1 mRNA upstream 10104 4501781 ~ 4525803 (-) False LOC113544596
XM_026943491.2 mRNA upstream 10104 4501781 ~ 4525799 (-) False LOC113544596
XM_026943492.2 mRNA upstream 10104 4501781 ~ 4523928 (-) False LOC113544596
XM_026943490.2 mRNA upstream 10104 4501781 ~ 4523928 (-) False LOC113544596
TU260468 other downstream 663760 3740282 ~ 3816787 (-) False LOC113544484
TU260466 other downstream 663760 3811560 ~ 3816787 (-) False LOC113544484
TU260467 other downstream 663760 3811560 ~ 3816787 (-) False LOC113544484
TU260175 other downstream 1569382 2907326 ~ 2911165 (-) True G219651
TU261666 other upstream 1218421 5710098 ~ 5710891 (-) True G220990
TU261738 other upstream 1306308 5797985 ~ 5803878 (-) False LOC113532612
TU261846 other upstream 1529543 6021220 ~ 6024311 (-) False dynll2a
trnap-cgg_8 other upstream 2703846 7195523 ~ 7195594 (-) True trnap-cgg_8
XR_004579456.1 other upstream 2900738 7392415 ~ 7463499 (-) True zgc:77784

Expression Profile