RNA id: XM_034310385.1


Basic Information

Item Value
RNA id XM_034310385.1
length 5745
RNA type mRNA
GC content 0.45
exon number 6
gene id lrfn1
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 3920788 ~ 4072868 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaatcacacacacacacacacacacacacaccgctgtcTCGTCTCAGAATCACTGGatcacattctttttttctcacactgATTAGGATCGATTAAGGATTCTGGATTAAGGAGCGCGcactggttgttttttttttttttgattgtgtttttttgttaatgcaGAAGGaattcatctctccatctctccatctcttcatctctccgtctctccgTTACGAGTTTAGAAGTCGCGAGGGGAAGATCCGGTGCGCATTTCTGCGTCTCTGCGGTGGAGAACTCCAGCGGATTTGTGCGGTTGCGTCTTTTTGATCTTCCTGATTGATGCGGTCCGGTTCtgtttggaaaataataattacaaatcagcatcaggagaggaggaagaggaagaggaggaggaggaggacgacgAGAATCGGAACTTCAGCGGCGGAGACCGGCCTGGAGAGgtCTTGTGTGAGGGTAGCTAACGGAGCAAACTTCTAATTTCCACTCGAAAAGACGGACTTCCTCAAGAGCTCCTTTTTCTCCAAGCTGGAAGTTTGTGACATCATTTCAACATGGCGGCGGCTACAATGCAACGAGCTCACATGGTTCCCTCAGGACCTTCGCTCCATCTGAGGAGgtggcATTGATCTTATTACCCAGAATTCCTTAGGAGAACACATGATGAGATGAGTGATACAGGAAGAGCCTTCATCTCTGGACGAGGAAGCTGATAAACCATGGAGCGGTTCATTTTGTGCATGATGCTGTTTGGGGTTCTGGTGAGAGGACAGCAGTGCCCAGGCCGATGTATCTGCCAGACCATCTCTCCCACCCTGACCTTGCTTTGTGCCAAGACTGGACTCCTATTTGTGCCGCACACTATTGACCGCAAGACCGTAGAGTTGAGGCTCACAGACAACTTCATCACGGCTGTCCGTAGGAAGGACTTTTTAAACATGACAAGCCTGGTGCACCTGACACTATCCCGCAATACCATAAGCCAGATTGCACCTCATGCCTTTGTTGGACTCAAAGCATTAAGGGCGCTTCATATGGATGGCAACCGACTGACTGATATAAAGAATGACCAGCTGAAAGGTTTGGTCAACCTTCGGCATCTCATCATGGGGAACAACCAGATCCACCATATTGACCCTTCCTCCTTTGACGAGTTTGTATCCACTATTGAGGATTTGGATTTGTCTTACAACAACCTGAGGACGTTGCCGTGGGAGGCTATAGCCAGGATGACCAACATCAACACGCTAACATTGGATCATAATCTTATCGATCACATAGAAGCTGGGACTTTCACGCTACTCACCAAACTGGTCCGCTTGGACATGACGTCCAACCGTTTGCAGAAGCTGCCTCCAGACTCCCTCTTCCAGCATGCTCAAGTGCTGTCTGATCCTAAGGGTTCCTCTGGTTCCTCTAGGCTGACAGTGAGTTTTGGTGGGAACCCACTGCACTGTAACTGTGAGTTGTTGTGGTTGCGCAGGCTCACCCGAAAGGATGACCTGGAGACTTGCGCCTCACCTGATCATCTTATGGACAAGTACTTCTGGTCTATTCAGGAGGAGGAGTTTATCTGTGAACCCCCTCTCATTATCAAGCACCACGTTACTAAGCCGTACGTGATGGAAGGCCAAGGCGTCACGCTCAAGTGTAAGGCCATGGGTGATCCAGATCCTGCCATTCACTGGCGCTTTCCTGATGGAAAACTGGTCCACAATAACTCACGTACCATCCTGTACGATAACGGCACTCTGGACATACTGATTACAACCCTGAAAGACAGCGGGGCGTTCAACTGTGTCGCCTCGAATGCTGCAGGAATAGCCACGGCAGCCGTAGAGATAAACATGATCCCACTGCCGTTGTTTGTCAACAACACCAGTCACATGAAGGAGGCTGACCCTGGCCTGTCTGACATCACCACCTCCACTAAATCTGGCAACAATGACACCAAGCAACAGGACAAGAGGGTGGTGGTGGATGAGCTGACTTCCAATTCAGCCATGATCCACTGGCCTTCAGAGAGACATATTCCTGGAATAAGGATGTACCAGATCCAGTATAACAGTACTATGGATGACACTCTCGTCTATAGGATGATTCCCTCTGAGAGCAAGACGTTCCGGATCAACGACCTGGCGGCGGGACGTGAGTACGAGTTGTGTGTCCTTGCCGTGTACGATGATGGCATCACGTCCCTCACTGCCACACGTGTGGTGGGCTGTGTCCACTTCCGCACCGCACCTGAGACCGGCCAGTGCCAGTTTGCTCAAGCACAGTTCCTGGGTGGCaccatgatcatcatcatcggTGGCGTCATTGTGGCCTCTGTGCTCGTCTTCATCGTCATCCTGATGATCCGATACAAGGCATATGGCACGGCCGATGCCTCCAAGGTCAAAGGTGGAACGTCTGTAAGCATCCACCAGTCGGGCCGTGCTACATCAAAGAAACAGGAGCATGTAGGCGAGTCTCCGGTTGGTACAGATAGCCATGCTATTGCGCTACTTAGCCTTGAGAATGAGACTCAGCAGGAAGAGAAGGCATTGACACCTCCGGTTAACTCAGAGGTGGCGGCTTTGGCTCTCGTACCTGCTCCACCCATTCCGCCATCCCGCAGGGCAAGTTTAGGAGCCCCACCTTCAGATGATGCCCAGACGGACAGCAGCCTGACAGGCTCCACCATGTCGCTTTGCCCCATGGGCACCAGCACAAGCGACAGGGACAGGAAGCGGACGGCAGCGGCCATTGGGTTGCTGCCAGGTGAGCTGGCAAGGGCGAGGCACCGCTTCTCCTTTGATGGGGACTACACGCTCTTCCAGAGCCACAGTTACCCGAGACGGGCCCGTGCCCGCCGCCACAAATCCAGCTCACAGCTTGATGTCTCGCCTCCGACTGAACGCCGCATCACGTTCAGCAGCAGCACTGAATGGATGCTCGAGAGCACAGTGtgaacaaacacatatacattGGGGTCCCAACTATCTTTATTTCATCGGTTATCATAGGTGAATTCAATTTTACTAAATTTCTCAAACAAAATCACTAATATTGCTTATTAGTGTTTACTAATTCACTAGTATAATTCCAGACTAGACTAAGACTGGAGGTGAGGGCAATCTTGCCTGCTCCCACAGTTTTCTGACAAATTCCTTGATCTTGACCAGGAAACTGCAGTTACTGATGAGGGGTTAATGAAAGTAGTAAATCTGTCATGCATTGTAAACATGCTCGTGTTAAGAAATGTGACTAGCTTCATATCCAACTGCACTCAACAAGTTAAAAACTTCCCCCTGCCATGACATTTTTGTTGGgtcctgcaggatcccagtcccaataCGCACCTCTAGTATAGACTATAACACTCCTGGAACACCAGTTCAATTTTATGTCATTTGTGTGTTCCTCTTATTCCTGAGCCACCTGAAAATTCCCTCCAGGCATACTCTGCACACTGGCAGCCATTTTTCACCTTGTGGCAGTCAAATCCCTCTCCACTGGTATCTCGCAGAACTTACTATGTTTACTTTACCGTCAGTTGCCATGGTTTCAGAGTGATATCCACACAAGCTAGCTTgagaatggataaaaaaaaacgaCACATTTGACCACAAATCCTTCATCCTTCACTTAAAAATAGTAATTCTGAAAGGACATGCTTGTGTATAAAATGCAACTGTGTAATGTGTCACTCTCTCCTAGTGTCAGGGTGACCTTCAAAAACAGGCTTAAATGgtttaatgtacaaaaataaGATGGCAAAAACACTGATGCTGTTCAAACACTTGAAGCTTTTAGCAGTAAAGTGAGTCTCACTGACAGGCTTAGGATCTCAGAGTAGGAGTGAAtatttggaacaaaaaaaaatctttcacaaTTGGGGGAAAACAAATACACCACTGTCACTGTTACGTTGAACTTTGCTGAACTTTGTCGCATCACTTGCCCTGCCCATTTCCCATCACTAACAGTAGTGGTACAGTTAGCATTTGTGGATTTCTAATGCTCCAGTCAGATTTCTGAATGCTACCGCAGCCACTTCAATCATTCACAGcatgttttcagttttaatCAACTAAAATCTGAAATGTGCTGGAATGGGATTGGTGCATCTGGAGGGGGTGTTTAAGTGGCTCTGGAGTGGGAGGAGTCAAAGGTGTGCATGATGAAACAGACGTGAAACAGACCTGCCAACCAGGAAGAGGAATAATGCAAAGTCCAACAGAAGtgagggattaaaaaaaaacacagtaaactGTAAAAGAGTTTGATCCTTTGTAGAAACTGAGAAATGTTTgcacatggctgacattttcactgttgatctgctTAAAATGCAGGCGTACCAAACAGTGTTtttactttctaattatcacTCCCATTAAAATTACTTGTGAAATGTTCGAGCTGACATTTTGTTGTAGGTCTaatcttttttctgtctgttttgtaTTTCAGACAGTGCACTAAAGCTTTTGGTGCATGTCTCATAAATCTAGCTGATTGATGttaactgtaaatgtgtataatgttaGCAAAGTCAGACATACGTTGATAGATTTgatttcatgttaatgaacgcAAAACATTCTCTACTCACCGTGACAGAAAGCAAGGACACCGCGTCAGTTCATCTCGCAAGTAAGAAAAAGTCAAGATGAAACATTAGTATAGTGAGATGGAGGGAAGGGAGTGGGGTTTCCAGAGAGTGAGCTGTTAgcggagagttcaaaacacttACGCAACTGTTCATCGTTCCAAATTTGTATAACGATTGGTTTATATGACATTTTATCGGGGAATAAAGATGATGTTCTTTATAGCGATAACTTGTAGCTACTTAGATGTTAAAATGCGGAGCTTGTATGCGAAATGGATAAAGGTTGACAGATGTTGCTCTAGAAGCAATAAAAAGAGGTTccgtcagaaaaaaaaaacgtttaccAAATTGGGAGCATAAAGCGATACTATTTGGATTAAACATTCACcctgaaaataatttgaaattcaATTTGAGACCAATTTCAGGTTTATATGTTGGTGTTATTGGCATTTTcatgattaaaacaaaatattcgATAACTGATGGAAATAAAGTTTCAGATTTTGGGATcctgatataaacacacacacacacacacacacacacactttttttccctcatgtgTCATGTGTTGTCcatgttcagtgttttatttgaaaGCACAGTCTGGCTCCGTTCTGcttcagacacagagagagatggtgataaagagaaagaaacggTCGCCACGCCCTTTCCCATAATGCAGCGGTGCCTTATTCCTGAACGTGTACCAATGGAAGATGTGCTGCTATGTGTTCATCCACTCTTCATACATGACATCCATCCTTTTGtttaatgcttatttttctATGTGATGCCACGGCGAGAGGTTGGTGGATATGTGACTGCTCTGTTTTCTTTGTAatacttcataaaaaaaaaaaaaaacgatgaaGATGATGATCGCGATAATGAATGATAAAAGTCCAAACGTGAGAGTCCAGAGTCACGATGCTCACGTGGGTCTGATCATTTTAGATGACTGAATGCACAGAAGACACGAGATGCAGAACATCGGACATGCATCGGACCAGTCTATATGACGcagataaattttaaaaaataaaataatattaataattcatacaAATACCGATTGCATTcattagaaaaggaaaaaaaaaaaaaactgagcctGGGAATTTCCTTGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579541.1 lncRNA downstream 95047 3821225 ~ 3825741 (-) True LOC113544520
TU260463 lncRNA downstream 113674 3727377 ~ 3807114 (-) False igsf11
TU260371 lncRNA downstream 332272 3588212 ~ 3588516 (-) True G219836
XR_004579533.1 lncRNA downstream 400301 3348363 ~ 3520487 (-) True LOC117599091
TU260229 lncRNA downstream 889787 3015916 ~ 3031001 (-) True G219697
TU260851 lncRNA upstream 208662 4281004 ~ 4282460 (-) True G220278
TU260852 lncRNA upstream 208662 4281004 ~ 4325145 (-) False G220278
TU260867 lncRNA upstream 232017 4304359 ~ 4305446 (-) True G220290
TU260836 lncRNA upstream 242524 4314866 ~ 4317621 (-) True G220266
TU260838 lncRNA upstream 316930 4389272 ~ 4392236 (-) True G220267
XM_026943316.2 mRNA downstream 103953 3811524 ~ 3816835 (-) True LOC113544484
XM_026943317.2 mRNA downstream 103974 3811524 ~ 3816814 (-) False LOC113544484
XM_026943329.2 mRNA downstream 113690 3727592 ~ 3807098 (-) True igsf11
XM_034310837.1 mRNA downstream 230293 3033027 ~ 3690495 (-) False lsamp
XM_034310858.1 mRNA upstream 186821 4259163 ~ 4269047 (-) True LOC117599095
XM_026943334.2 mRNA upstream 245649 4317991 ~ 4336896 (-) True LOC113544495
XM_026943335.2 mRNA upstream 246001 4318343 ~ 4336897 (-) False LOC113544495
XM_026943336.2 mRNA upstream 246001 4318343 ~ 4336897 (-) False LOC113544495
XM_034310535.1 mRNA upstream 247810 4320152 ~ 4336898 (-) False LOC113544495
TU260468 other downstream 104001 3740282 ~ 3816787 (-) False LOC113544484
TU260466 other downstream 104001 3811560 ~ 3816787 (-) False LOC113544484
TU260467 other downstream 104001 3811560 ~ 3816787 (-) False LOC113544484
TU260175 other downstream 1009623 2907326 ~ 2911165 (-) True G219651
TU261666 other upstream 1637756 5710098 ~ 5710891 (-) True G220990
TU261738 other upstream 1725643 5797985 ~ 5803878 (-) False LOC113532612
TU261846 other upstream 1948878 6021220 ~ 6024311 (-) False dynll2a
trnap-cgg_8 other upstream 3123181 7195523 ~ 7195594 (-) True trnap-cgg_8
XR_004579456.1 other upstream 3320073 7392415 ~ 7463499 (-) True zgc:77784

Expression Profile