RNA id: TCONS_00000697


Basic Information

Item Value
RNA id TCONS_00000697
length 4931
RNA type mRNA
GC content 0.39
exon number 5
gene id XLOC_000409
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 34496855 ~ 34558804 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACGTGTAAATTCTACTGTATAATCATCTCTTATTTTCTGAAAGTGCATATGTTTAATGACATCCTAACTGAATATGACACATGGGCAATGTCAATGAACAGTTATGTATCAGAACATTCCACACTGAGTCATTTATGGCATGCCAAATGTCATAATTCAAGATTGTTGATTTAAAAGGATCTAAAACAAGACTCACTGGCAAAATACAAGTCAGTTGTTGTCAATTTGCTGTGCTCACAAACGGAGTTGTGAACAGAACTCTCTGAATGATAAGAAACAAATGATTTTTCAAAAGTCAGCGCATCTGATCTTCATAAACATGACTATAAAATTCTTCACTTAGTAGCTATAGTAAACACTTCTCAGAATGATATATTAATTCTTATTAAACCATCTGGCGTGCTCTCTGACATGTGTTTATTGTTATCCTCGCACAGTCTATCTATTGGACTGACATAAAGCATAACTCCTATATGATCTGTAAGACTAATCCAAGACTGAAAGCTTTCTACTATGTCGTGTCATCacagataaacaaataataaaacattaaataacattttttttcttccatcccTCACAGGAACAGCGCTATCAGGATGTTGATGCTGGATGGGATGCCAACCCTGCCAGTTAAAATCAATCCTGCAGAGTCACAGAGACGGTCTCCTGTGATCCATGACTACACAGAGATGGGTGTGCTGGTGTTGAACCGCagatttcggacacagccagaTGACAGACGATTCCTGTCTGACCCCTTCCAGACGCAAACAGAGCCCGTGGATCTCTCCACTAACAAAGCCAGAACCTCCCCGTCACTTTCAGCATCTTCATCTTTATCTTCATCTCCCTCGTCTTCTTCGTCATCAATACGATTTTGTCCACGCTCTCCTCCCTCCAGCAAGTCTCTGCCATCTTCATCCCCATCATCATTATCCATGCCTTCGTCCTCCTCCACATCCGTCATAACCCCGGTTCCTCGTTTGAAGATGTCTCCATCCTGCTCTGTCCCGGTGGTGTCATCTCTTCCATCCAGGGGACTCAGGGGACAGTCATTTTTGCACATACCCCAGCTGATGCCTCCGTGTTCCAGTCCGGTTCACATCCATCCACGCCGGGTGCCGGTGGTGGTGCAGCCCATGCCGCTGGTCTACCCTGGGGTGGGTTCGCTGGGCAGCAGCAGGCTCATGATGCCACTTTTGGAGGAAAACAGGATGCACAGAAAAGtgaTGCACCGAATGGCAGATGGACTGTCACCGCGACGATCTCTGAGTGACAGCGAGGATGACGACTTGCCCAACGTGACCTTGGAGAGTGTGAATGAAACAGGATCCACCGCCTTGACCATCGCCCGCGCTGTCCAAGATTCCCTGTTGCCGTTCAGTATTGAGAGTCTGCGGAGGCCCAGGCCTTCAGAATCACCAGACTCAAAGAGAAGACGCATTCACAGGTGTGAGTTTGAGGGCTGCAATAAGGTTTACACCAAAAGCTCTCACCTTAAAGcccacagacgcacacacacagGTGAAAAGCCATATAAGTGCACGTGGGATAACTGCACATGGAAGTTCGCTCGCTCTGACGAACTGACGCGACATTACCGCAAACACACCGGCGTCAAACCGTTCAAATGCAGCGACTGTGACCGCAGTTTCTCCCGCTCGGACCACCTTGCCCTCCACCGCCGCAGACACGCTCCACAAACATGCCTAGTGTGAAAAAACACACTCAACGGACAAAACAAGCAGAAAGAGCGGGTCTCTTTCTGCCAGTGCCGCATGCAGAAGCTCTGGAAATATTCCCCGCACAACAATAATGAGGAGAAAGGTATGGTCAGTTCATGGAATTGGATAGATATGTATCAGCATTTATTTGCCTTTCCCTCATACGGTTTATTGTTCTGCACTTTTAGGTGAGGTTTATTCGTGAAGGTGGGAGCCTTGAGTCTTTAATAATGAACTATTAAAAGCCATGTGctgttaaatgtgttttatatagGCCTACAGGTTTCCTTCAGGTTTACTCATGGACGCCTAATGGAGTTGAAGGTTTTTCTTTTAACTCTCAAAACTATTTAGAAATCATGTTGTACTTATTTTTCTCGTTTAAAAAGCATCAAAGAGGAGCCTGAATATTTTCTGTGCAAGCTTTGGTTATGCATTTGGcaagtaaaagtcactttgaaaaacaaaaaacaaacaaaatatagttTGCAGGGTAATAAAGGCATGGCTGTAAGTGTGTAGAATTTAGTACATAGGCCTACAACATTATCAAAACCCACACAAAAAGACATTAAAACAAACATCACAGTATTTACTGCAAGTTCACAGCTTTGCATGGGCTCCTCCAGTTATCACTTTATTATGAATTTTgaaattgtttttgtttctttatgtATAACTGAATGTGAGGAGACCGACGTAACATTTTAAACTTTCCCTGCATCATTTGTGCACAAAACTAGTGTAGCAGATGTCTGTATATTTTATAGTCTCTACCATGTGGtatatcattttgtttgtttgtattgtttgtattGTATGTCATATATTTGTTCTGTATTCCAAGTTTGCACCCCGCTGTCCATTAATATGTGATGCCAAAATCTATAGTATTTTACAGGGAACCCTGATGACTAAAAATCATGAGTGTAAATGATCGTCAAATGGGCAGtccttttattattgttattattttcttttacaatGATGTATCTGTAAATGATGTTATGGTAAACATTTCAGTTTTATATGGATTTAACTGTGaatttatacataaatacagtatactgtatgttAGAAAAAAAGGCATGAATAAAAGCACCGATTTGTATGTTCAGAAAAGACTCTTGTGTGaatttaaacatgatttatgaaatgttaaaatgttagaTCACACTCTTCACTCCAGATTAATAAGATCTAGCCCCGGATGCCAGATCCtgtcagaaaatgtctgtttctttgGGTATCCAGACAACAAGCCAGCGAGCAGACTCACCAATGCCCAAACCTTTTATTCAACAGTCTCTTAAATATAAGAGTTGACTAAGAAGCAGAAGCAGATGACGGTCGGTCATGAGGATAAAGGaagagcagagtttattgaataatcttagttgcATATGATTTAATGCTTAgacttggatggatggatggatgtcacAACTGTCCCCAATTACAGAATTCATTTAAGAGCTTGCCATAATAACAATGTACACTTTTAATTTTATCACCGTTTCACTAtgttatttaatttgaaaaaaaaaaaaaagtaatttttgaaaacaattaattcattttaaagttCAAAGAAGTATTTTAGTAAAGTTTCAGTGTAGATTTtcagtgaaaaaaatatttttgttcagttttttttaagcCTGGCAATTGGTTGTTGCTTGTTCCTTTAGTGTAATTATATGTCCAACTTAAcacatttaacaatttaaccaATTTACATTTAATCTGTTTACCaacaactaaaactaaaatcCAACCTGATGTTTTagaatttttcttattattacattttaatgaatgttGCAATCGTCCCCCTGCTCGGAGTCAGTTGCAAAGTTTGACTTTGTCTGTTGAGGTTTCTGCATACTGTACATTATCATATGTACACATTACAGCAATGTGGGTTGGTGTCAAATAGATGTGGCTTTATTGTATTAAAAGTTTGGCTTTCTCTGTGAAACTGAATGAAATGCAAAAAGTGTTGCAACTGCTCTTCCCCTATTGTTTTACTCTCTGGTAATCATATAATATTCCTATTTAGTGCAGTTGTTGCATATTAAACATAATATGTGCAgttttaatacatataaaatgtgCTTCTTAAAACCCACCACAGGGGTGCAGCAGTTTAccagggttaaaaaaaaaaaaagtctcactaTCCTCTATTCAAACAGCTGTTAAGTCCTAAACTGGACACCATTACGGAGGTCAGTTCATGACACGCAGTTTAACCTTTAACCCACCTTTACCCTACTCTTGACGAACGAAATGAAAACAAATGCCATCTTTCCCCTTGGGTGTTGTCAGCGTTCGTTAAGTAATGATGAAACACCTTTCGTTTCTGTGGTGATTGCGCAGGTGCGTGGGTTCAATCAGGGAGCGTCTTCCTTTTCGTGACCTCCACATATTTGGATATTGGCACAAAGTATTTAATGATTCAGAAATGTTCTAGATTTTATCTGCGTGTCTGGTTGCATCATATGGAACACTTTTCTAATCGGTCCTCCTTTTGCAAATGTCCTCAATGATTAGTTTTcagtcatcattcattttctttttggcttagtccctttattaatctcggattgccacagcggaatgaaccgccaaccatgtgtgtgtgtgtgtgtgtgtgtatgtatatatatatataaataataaaatataattcattcagcagaatgagccgccaactaagagcatatgttttacacatgcagccgatgccttttcagctgcaacccagtactgagaaacacccatacacactctttcatacacacacatacactacgaccaatttagtttatccaattcccctatactgcATGCCTTTTAGATTGTGGGTTAAACCAGCACCCatagaaaacccacacgaacacgaataatatataatagaatatataaaaacattttaaataaacaatggattaacacaattatttttgaatgaaagaatattttaaaatattaaaatattttagcttAAAACTGACTACATTCTTGTTGTTGAAAAAGTGAAATATtcgctgtaaaaaaatgctgggttccaaactgattaagttagcttatcacatttaagttgactgaacatgcaacaattaagttgttccaaaagaAATCTGAAAAGAATAATGTTtccactcattttaaataagtaatttggaCAAACAGCAGAA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9188 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human KLF12 (Kruppel like factor 12).

Ensembl:

ensembl_id ENSDART00000180483

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003085 lncRNA upstream 72766 34450659 ~ 34454447 (+) True XLOC_000408
TCONS_00003084 lncRNA upstream 293157 34231603 ~ 34234056 (+) False XLOC_000404
TCONS_00002851 lncRNA upstream 295086 34231738 ~ 34232127 (+) True XLOC_000404
TCONS_00000683 lncRNA upstream 825297 33697341 ~ 33701916 (+) True XLOC_000399
TCONS_00002850 lncRNA upstream 1008390 33517802 ~ 33518823 (+) True XLOC_000394
TCONS_00002852 lncRNA downstream 298564 34857368 ~ 34859323 (+) False XLOC_000414
TCONS_00002853 lncRNA downstream 298564 34857368 ~ 34861057 (+) False XLOC_000414
TCONS_00002854 lncRNA downstream 300002 34858806 ~ 34859323 (+) True XLOC_000414
TCONS_00003086 lncRNA downstream 475490 35034294 ~ 35093512 (+) False XLOC_000415
TCONS_00003087 lncRNA downstream 517663 35076467 ~ 35093512 (+) True XLOC_000415
TCONS_00000694 mRNA upstream 229810 34295925 ~ 34297403 (+) True XLOC_000406
TCONS_00000693 mRNA upstream 265220 34243650 ~ 34261993 (+) True XLOC_000405
TCONS_00000691 mRNA upstream 293275 34203858 ~ 34233938 (+) False XLOC_000404
TCONS_00000690 mRNA upstream 294964 34203817 ~ 34232249 (+) False XLOC_000404
TCONS_00000698 mRNA downstream 126601 34685405 ~ 34694365 (+) False XLOC_000410
TCONS_00000700 mRNA downstream 126666 34685470 ~ 34694359 (+) True XLOC_000410
TCONS_00000701 mRNA downstream 136569 34695373 ~ 34706763 (+) False XLOC_000411
TCONS_00000702 mRNA downstream 136574 34695378 ~ 34706903 (+) False XLOC_000411
TCONS_00000703 mRNA downstream 136585 34695389 ~ 34706679 (+) False XLOC_000411
TCONS_00000695 other upstream 126859 34400240 ~ 34400354 (+) True XLOC_000407
TCONS_00000688 other upstream 404241 34122880 ~ 34122972 (+) True XLOC_000403
TCONS_00000685 other upstream 559940 33967157 ~ 33967273 (+) True XLOC_000401
TCONS_00000684 other upstream 792079 33735018 ~ 33735134 (+) True XLOC_000400
TCONS_00000681 other upstream 833309 33683231 ~ 33693904 (+) True XLOC_000398
TCONS_00000699 other downstream 126641 34685445 ~ 34688642 (+) False XLOC_000410
TCONS_00000704 other downstream 136710 34695514 ~ 34706470 (+) False XLOC_000411
TCONS_00000714 other downstream 936100 35494904 ~ 35515273 (+) False XLOC_000418
TCONS_00000717 other downstream 1232088 35790892 ~ 35803084 (+) True XLOC_000419
TCONS_00000728 other downstream 1595457 36154261 ~ 36154377 (+) True XLOC_000425

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU236326 True 3048 lncRNA 0.37 2 CI01000049 3756903 ~ 3760056 (-)