RNA id: XM_034310333.1


Basic Information

Item Value
RNA id XM_034310333.1
length 3485
RNA type mRNA
GC content 0.49
exon number 9
gene id zgc:172282
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 395392 ~ 464991 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAATGTTGCTGTGAAATGAAATCTTTTGCTGCTGTGTGAGGCACAAAGGGCGCCATGCTGATCAGTCTGCTGCTCTTAAACACAGGCTGTGCTTCTGCTCCTCACTGCGGAAGTTAAAGCAACAGTGGGGAGTTTGTTCTGCACGCGCTACGGCAATTTTCCTGAGATtctccacatctctctctctctctctctctttttttttttttttgatcctTTTTTGAAATCCTGCCTACGTCTTACTGCCTGTAGAGCACGCGCCGCCGTTACCGGAGCAGTGAGGACGCGAGCTCGCGCGAGCCTGCGCCCTACACGCCCATGAGCCCGGCCCGGAAGACGCCGCGGTCGCGTGCATGCACGTTAAGCTCGGAGGACGCGCGCTTTCGGTGGATGTGAGATCTCCATGTCGTTATTTGTGAAGATGGATGCGTGTGCTCCTGTGCTTGGCGCAGCTGAGACCAGCATGAACACTGTCATGTCTGCAAGGGCAGCGATCCACCTACAGCCTTGTCGAATTCGCAATTCGAGGACAGTTCTGGGTTTAACTGCACGCCCTGGTCTGGTGCGATAGACGGAATGAGGCTGTGTTTTTCTCATCTGCTGCGCTGTAGTTGTCACAGTATTCACCTGATTTACGTGCAACACGGCTACATCTTCGGCACCGTGCTCCATTGGAGAAATGCTCGATTGTACTGAATACGGTCACGAATTGGATTATGTAAAAAAGATTCTCGAAAGTTTCCCAAAACTCTAAGGGATGGAGTGGCTCATCATCTCTCTGCTAATACTGGTTGTTTCTACCTCTGGACATCTGTGTCCCAAGCGTTGCATGTGCCAAAACCTGTCACCATCGCTTGCTATTCTGTGTGCCAAGACGGGCCTGCTCTTTGTACCCACGGTCATTGATCGCCGGACAGTAGAACTTCGACTTACTGAGAATTTCATCACAGCAGTAAGGAGGAGGGACTTTACAAACATGACAAGTCTCCTGCACCTGACACTGTCACGCAACACCATCAGCCAGATCATGCCTTACACCTTTGCCGACCTCAAACGGCTGCGAGCGCTGCATCTGGACAGCAACCGCCTCAGTGTGGTCACTGATGACCACTTCCAGGGTCTAACCAACCTAAGGCACCTCATTTTAGCCAACAACCAGCTCCATAACATTTCTCCACATGCTTTTGATGACTTCCTGGGGACTCTGGAAGACCTGGATCTGTCTTACAATAATCTGGTGGACATTCCTTGGGAAACCATTGGGAGGCTCACCAATGTAAACACACTTAATATGGACCATAACCTTATAGAGCATGTCCCTTTAGGAGTGTTTTCCAACCTACACAAGCTAGCACGTCTAGATATGACATccaataaactgaaaaaaattccTCCTGATCCTTTGTTTCTTAGGATCCCAGTTTATGCTAAGTCCAAGGGGTCTCCACTGACCTCACTTGTTCTTAGCTTTGGAGGAAATCCACTCCATTGTAACTGTGAGCTCCTTTGGCTAAGACGGCTTACGAGAGAAGATGACCTGGAAACATGTGCCACACCTCCCGATCTTACTGCTAAATACTTTTGGACAATTCCTGAAGAAGAGTTCATCTGTGAGCCACCTGTTATTACAAGGAGGTCCTTCAAGACCTTTGCTATGGAGGGACAGCCAGCCAGCTTAAAATGTAAAGCCAATGGTGACCCAGACCCAGATGTCCACTGGATTTCTCCTGAAGGTCGTCTGATCTCTAACACGTCCCGCACTCTCACCTTTAGCAATGGAAGCCTGGAAATAAACATCACCTCTCTGAAAGATATGGGAGTGTTCACCTGTATTGCCTCCAATGCTGCTGGTGAGTCTACAGGCACTGTGGAACTCGTGGTCACTCCACTTCCTCACCTAGCCAATAGCACTAATCGCATCCAGGAGCCTGATCCAGGACCATCTGATATCTTAACATCTGCCAAGTCCAGCTCTTCCTATAGCAATGATACAAGGATGCAAGAAAAGACGACGATACTAGCTGAGCTCACTGCAAACTCGGCTCTCATTAGATGGCCTTCACAGCAGCATTTCCCGAGTATTAGGATGTTCCAGATACAGTACAACAGCTCAGTAGATGACACCTTGGTCTACAGGATGATCCCATCTACAAATCGGGACTTTCTGGTGAGAGATCTGGCATCTGGGCGTGAGTATGACCTGTGTGTGCTGGCTGTATACGAGGATGGCATAACCTCGCTGACTGCCACGCGGCAGGTGGGCTGCGTCTCATTCGTCACGCATGCCGAGTACACCCAGTGCCATGTGTTGCGCAGCCACTTTCTGGGTGGcaccataatcatcatcatcggtGGCATCATTGTGGCATCTGTGCTggtcttcatcatcatccttaTGATTCGCTACAAGGTGTACAGCCAGCAGGGGCCCAAAGCTGGCAAAGGACTAGCCAAGAGCAAGGTCCGATCACAAAGCAACGGAGGAGGACAGGTTCCTGGGCAAATGCCATGCTCAGGCTCCAAAGTCATGGAGGGGCAGGAGGACCAAGGACCAGGGATTGGAGGAAGCACAAGAGTGACAACTTCCTCTCTCAAAGACTGCATTACCATGGCTTTAGTCATGGACTGTGAGAAGGGAATGCAGAACTCAGAGGCAAGCAGTGAGGGCACTGTTTTACCCTTACAGAAACGCCTCTCCAGGACGTGCCTAGAGCAAAAAGGTCAACCTTCACTGTCCACCATCGATGGGACCTCAACTGTGGAAGGAAGCACAGCAGGCCAGCAGGTCAGTGATGAGCAAAAGGCTTTGCCAGATTGGGGCAATTTAAAAATTTGATGACCTTCACTGCTGTCTAACGAGAGGCAGCCACCAACCCTGAAAAAGCTCTCTAGGTGACCTGAAATCAGGGAAAACTTAATGACTTAATGAGGgaatcctttctttctttcaaaaaaaaaaagtgccattcTTCTATCTCCAGGACTATCCAAGAAATTACGCCATGTTATATTTAGGGACTTTTGCAAGAACAAAGAAAACTGAGTACATCTCTGGCTTGTGGACTTTACTGCCTTTTAACCTCACTGTGGCCAGGAGGGTCTTGTTTTTCTAGCAGTTACAGTATTCATCACTACCTGACTGCTCTGTTTAACAGAAGgtatTCTCCCTTTCCCATCCTTTCAGATATCCAGAGAATTTCAGAAGGAGCTTCAGGACACACAGCTGACGTGATccactcctcttcctccttatgtaatttttttcacatctgcCAAGCGAGAACGGACACAAGATACGTGGCAAATAAATGCTGACAAACAGAGCACTGAACGCCCCACGTTCAGGCAACAGGCTCGTCATCCCTGCTGAAACATGAAGGAAAAGAGACTTCGATCTGTCCAACAGTATGACGGAAAACAGATGAATGTGTACTTTAACACAGTGAAGTGCACGCAACAgaggtaatgtgtgtgtactccTCATT

Function

GO:

id name namespace
GO:0045202 synapse cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258289 lncRNA downstream 13088 381748 ~ 382304 (-) True G218064
TU258239 lncRNA downstream 136451 252132 ~ 258941 (-) True G218024
TU258243 lncRNA downstream 180421 214451 ~ 214971 (-) True G218028
TU257533 lncRNA downstream 322234 69744 ~ 73158 (-) True G217401
TU258409 lncRNA upstream 247963 712954 ~ 715590 (-) False numbl
TU258419 lncRNA upstream 266371 731362 ~ 741843 (-) True G218184
TU258423 lncRNA upstream 266525 731516 ~ 736893 (-) True G218185
TU258424 lncRNA upstream 266927 731918 ~ 736893 (-) False G218185
TU258426 lncRNA upstream 268626 733617 ~ 738218 (-) True G218187
XM_034310641.1 mRNA downstream 7729 363898 ~ 387663 (-) True scn2b
XM_034310388.1 mRNA downstream 35783 332209 ~ 359609 (-) True scn4ba
XM_026943531.2 mRNA downstream 153389 148086 ~ 242003 (-) False LOC113544624
XM_026943530.2 mRNA downstream 153389 148086 ~ 242003 (-) True LOC113544624
XM_034310796.1 mRNA downstream 153446 183894 ~ 241946 (-) False LOC113544624
XM_026943510.2 mRNA upstream 86024 551015 ~ 553472 (-) True zgc:114130
XM_034310476.1 mRNA upstream 86024 551015 ~ 553102 (-) False zgc:114130
XM_034310477.1 mRNA upstream 86024 551015 ~ 552782 (-) False zgc:114130
XM_026943306.2 mRNA upstream 102516 567507 ~ 572429 (-) True trappc6bl
XM_026943426.2 mRNA upstream 146033 611024 ~ 622612 (-) True pnkp
trnae-cuc_27 other downstream 163581 231740 ~ 231811 (-) True trnae-cuc_27
TU258381 other upstream 189121 654112 ~ 684355 (-) False dpf1
TU258469 other upstream 413781 878772 ~ 879183 (-) True G218214
TU258537 other upstream 615297 1080288 ~ 1134018 (-) True G218265
TU258580 other upstream 689419 1154410 ~ 1154700 (-) True G218302
trnag-ucc_16 other upstream 1030771 1495762 ~ 1495833 (-) True trnag-ucc_16

Expression Profile