RNA id: XM_034310337.1


Basic Information

Item Value
RNA id XM_034310337.1
length 4090
RNA type mRNA
GC content 0.44
exon number 6
gene id zgc:172282
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 395392 ~ 464991 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACTGAGAATCACAAGCTACGTTTCCCAAAACTCTAAGGGATGGAGTGGCTCATCATCTCTCTGCTAATACTGGTTGTTTCTACCTCTGGACATCTGTGTCCCAAGCGTTGCATGTGCCAAAACCTGTCACCATCGCTTGCTATTCTGTGTGCCAAGACGGGCCTGCTCTTTGTACCCACGGTCATTGATCGCCGGACAGTAGAACTTCGACTTACTGAGAATTTCATCACAGCAGTAAGGAGGAGGGACTTTACAAACATGACAAGTCTCCTGCACCTGACACTGTCACGCAACACCATCAGCCAGATCATGCCTTACACCTTTGCCGACCTCAAACGGCTGCGAGCGCTGCATCTGGACAGCAACCGCCTCAGTGTGGTCACTGATGACCACTTCCAGGGTCTAACCAACCTAAGGCACCTCATTTTAGCCAACAACCAGCTCCATAACATTTCTCCACATGCTTTTGATGACTTCCTGGGGACTCTGGAAGACCTGGATCTGTCTTACAATAATCTGGTGGACATTCCTTGGGAAACCATTGGGAGGCTCACCAATGTAAACACACTTAATATGGACCATAACCTTATAGAGCATGTCCCTTTAGGAGTGTTTTCCAACCTACACAAGCTAGCACGTCTAGATATGACATccaataaactgaaaaaaattccTCCTGATCCTTTGTTTCTTAGGATCCCAGTTTATGCTAAGTCCAAGGGGTCTCCACTGACCTCACTTGTTCTTAGCTTTGGAGGAAATCCACTCCATTGTAACTGTGAGCTCCTTTGGCTAAGACGGCTTACGAGAGAAGATGACCTGGAAACATGTGCCACACCTCCCGATCTTACTGCTAAATACTTTTGGACAATTCCTGAAGAAGAGTTCATCTGTGAGCCACCTGTTATTACAAGGAGGTCCTTCAAGACCTTTGCTATGGAGGGACAGCCAGCCAGCTTAAAATGTAAAGCCAATGGTGACCCAGACCCAGATGTCCACTGGATTTCTCCTGAAGGTCGTCTGATCTCTAACACGTCCCGCACTCTCACCTTTAGCAATGGAAGCCTGGAAATAAACATCACCTCTCTGAAAGATATGGGAGTGTTCACCTGTATTGCCTCCAATGCTGCTGGTGAGTCTACAGGCACTGTGGAACTCGTGGTCACTCCACTTCCTCACCTAGCCAATAGCACTAATCGCATCCAGGAGCCTGATCCAGGACCATCTGATATCTTAACATCTGCCAAGTCCAGCTCTTCCTATAGCAATGATACAAGGATGCAAGAAAAGACGACGATACTAGCTGAGCTCACTGCAAACTCGGCTCTCATTAGATGGCCTTCACAGCAGCATTTCCCGAGTATTAGGATGTTCCAGATACAGTACAACAGCTCAGTAGATGACACCTTGGTCTACAGGATGATCCCATCTACAAATCGGGACTTTCTGGTGAGAGATCTGGCATCTGGGCGTGAGTATGACCTGTGTGTGCTGGCTGTATACGAGGATGGCATAACCTCGCTGACTGCCACGCGGCAGGTGGGCTGCGTCTCATTCGTCACGCATGCCGAGTACACCCAGTGCCATGTGTTGCGCAGCCACTTTCTGGGTGGcaccataatcatcatcatcggtGGCATCATTGTGGCATCTGTGCTggtcttcatcatcatccttaTGATTCGCTACAAGGTGTACAGCCAGCAGGGGCCCAAAGCTGGCAAAGGACTAGCCAAGAGCAAGGTCCGATCACAAAGCAACGGAGGAGGACAGGTTCCTGGGCAAATGCCATGCTCAGGCTCCAAAGTCATGGAGGGGCAGGAGGACCAAGGACCAGGGATTGGAGGAAGCACAAGAGTGACAACTTCCTCTCTCAAAGACTGCATTACCATGGCTTTAGTCATGGACTGTGAGAAGGGAATGCAGAACTCAGAGGCAAGCAGTGAGGGCACTGTTTTACCCTTACAGAAACGCCTCTCCAGGACGTGCCTAGAGCAAAAAGGTCAACCTTCACTGTCCACCATCGATGGGACCTCAACTGTGGAAGGAAGCACAGCAGGCCAGCAGGTCAGTGATGAGCAAAAGGCTTTGCCAGATTGGGGCAATTTAAAAATTTGATGACCTTCACTGCTGTCTAACGAGAGGCAGCCACCAACCCTGAAAAAGCTCTCTAGGTGACCTGAAATCAGGGAAAACTTAATGACTTAATGAGGgaatcctttctttctttcaaaaaaaaaaagtgccattcTTCTATCTCCAGGACTATCCAAGAAATTACGCCATGTTATATTTAGGGACTTTTGCAAGAACAAAGAAAACTGAGTACATCTCTGGCTTGTGGACTTTACTGCCTTTTAACCTCACTGTGGCCAGGAGGGTCTTGTTTTTCTAGCAGTTACAGTATTCATCACTACCTGACTGCTCTGTTTAACAGAAGgtatTCTCCCTTTCCCATCCTTTCAGATATCCAGAGAATTTCAGAAGGAGCTTCAGGACACACAGCTGACGTGATccactcctcttcctccttatgtaatttttttcacatctgcCAAGCGAGAACGGACACAAGATACGTGGCAAATAAATGCTGACAAACAGGTGTGCCTGGAGAGTACGAGTacacgcttttttttttctaatgttgtGTAACTTTAATTTGGTGTTTTGTGTAGTAGTGTACATAGCTGTACATAAGCAATTTCAAATCTTATAGTTTtgtacatgtattttttatggTGTGTAATCATATAAAGAGTGTTGGATTCATGAAGTTTTAATGTAAcaacacataaatacataaagtaTGTTGACACAGTGAAAGGAAATGCACCATTCATTTGTGGGCTGGTGATGAtgtaagagaaataataaaCCTTTAAGTAAACTAAGGAATCAATTACACAGAAAAACCTTACAGCCTAAACCACACTCTGCCAAAGGCCAGTTACACCAGTTTCAAGTCAGCCTGATCTCCTGGGAAGTGCGTATGAGTTCAGCAAGGACAGTGTGGCTGGATTTCGTTTGTCTTCAAACGTATGAAAATTGGTACgaaaaaaagatgaatgctAACTCCacctctaacactaacactaacctttGTGTCTTTTCATGTGGGATAAGTCATGCGAAATGTACGAGCATGAGACCAGACCGTGTTCAACATGTTCAAGTGTACATGGTTTAGGAACATTTGTTCATagatgaaatatgaaataaatatctcTCTTCTGATTTAAACAGACTCAAATTGTCCATTAGTGACTGAAGATAATGGACTAGAGAGGTTTGTAGCCTTTGGAATCTCATGCTGTTATAGTCAAATCACAATAATAGCATATGAAGTCTTATAACAGTAACACAAGACCaaacaaatgtataaattacattaaaagaaattaaaaggaaaaacttTCATAAATTGTCtgagtaaggtgttgggccaccacaagcccCCGGAGCAGCTTCAGTGTGCTTTGGCTTTTTATAAATGTCTGGAACTATGCTGGAGTTacgaacaccattcttccagaAGCTATTGCTGCAGTTGTGGTTTTGATgatttgatgatggtggtggtggagagcaaATCCTAACAcatccaaaatctcccatatgttcaactggattgagatctgaatcaaaaaataaatgtgtaaaagactGAGATCTGCCACCCTTCACACGTTTTGCGTGGGAGCTCCGCTTGTTAACGTCGGAGTACGTTGGGAGAAGTAAGGAATCATCACTCTGAAATGTAAAAACACAgctgtcttcttttttcctaataaaaaagacagatgaGGAACTCGACTAATGAATCTGGAGTGATTGAGCGGTCAGCACTCAGACGTGTTCAGACAGCttgagcagcagatcaacagtgaaGTCGGCCACGTGGAAGCATTTCATGTTTTCTCCGAGGGACGTTAGATAAATGATTTGTAAAAGAATAATACTGAATTtgtactgttatgttttttactGTTCACTGCGTTTACTCAGGCGGTGGAGCTGCACATTATTCTCCTTCAGTGTTGTCAGATCTGCTGTATTCTAAGACTTATTTTATTAGATAGTTATTAA

Function

GO:

id name namespace
GO:0045202 synapse cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258289 lncRNA downstream 17404 381748 ~ 382304 (-) True G218064
TU258239 lncRNA downstream 140767 252132 ~ 258941 (-) True G218024
TU258243 lncRNA downstream 184737 214451 ~ 214971 (-) True G218028
TU257533 lncRNA downstream 326550 69744 ~ 73158 (-) True G217401
TU258409 lncRNA upstream 293669 712954 ~ 715590 (-) False numbl
TU258419 lncRNA upstream 312077 731362 ~ 741843 (-) True G218184
TU258423 lncRNA upstream 312231 731516 ~ 736893 (-) True G218185
TU258424 lncRNA upstream 312633 731918 ~ 736893 (-) False G218185
TU258426 lncRNA upstream 314332 733617 ~ 738218 (-) True G218187
XM_034310641.1 mRNA downstream 12045 363898 ~ 387663 (-) True scn2b
XM_034310388.1 mRNA downstream 40099 332209 ~ 359609 (-) True scn4ba
XM_026943531.2 mRNA downstream 157705 148086 ~ 242003 (-) False LOC113544624
XM_026943510.2 mRNA upstream 131730 551015 ~ 553472 (-) True zgc:114130
XM_034310476.1 mRNA upstream 131730 551015 ~ 553102 (-) False zgc:114130
XM_034310477.1 mRNA upstream 131730 551015 ~ 552782 (-) False zgc:114130
XM_026943306.2 mRNA upstream 148222 567507 ~ 572429 (-) True trappc6bl
XM_026943426.2 mRNA upstream 191739 611024 ~ 622612 (-) True pnkp
trnae-cuc_27 other downstream 167897 231740 ~ 231811 (-) True trnae-cuc_27
TU258381 other upstream 234827 654112 ~ 684355 (-) False dpf1
TU258469 other upstream 459487 878772 ~ 879183 (-) True G218214
TU258537 other upstream 661003 1080288 ~ 1134018 (-) True G218265
TU258580 other upstream 735125 1154410 ~ 1154700 (-) True G218302
trnag-ucc_16 other upstream 1076477 1495762 ~ 1495833 (-) True trnag-ucc_16

Expression Profile