RNA id: XM_026943348.2



Basic Information


Item Value
RNA id XM_026943348.2
length 6696
RNA type mRNA
GC content 0.44
exon number 19
gene id naalad2
representative True

Chromosome Information


Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 2019308 ~ 2035377 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


cacacacacactcgcactctctcacacacacacacacacacacacacccgtccTGCATAAGCTTGTGTGTGAGCGCGCGCTGTGTGGACTTCAGAGCAAACTCTCTCACGCGCACTTCAATGGGAGCGAAAAAGAAGCTCGTGCGCTGGTTGCAGTGGCTCACCGTCTTCACGCTCTTGTTCTTCGTAGGCTTTATCATCGGGTGGTTTGCGAGACCTGCTGACACGCAGCACGAAAAGCCGAAGCATGACTTCCTGCAGGAGTTCTTGGATGAAATCCATGCAGCCAACATCAAACAGCATCTTAGGAAGTTCACTCGTCTGCCCCACTTGGCGGGAACGGAGCAGAATCTGCGATTGGCTGAGCAGATTCGGGAGGAGTGGCTAGCGTTTGGGCTCGACTCGGCCGAGCTCGTGTGGTACGATGTTCTGCTCTCGTATCCGAACACCACCAGGCCGAACTACATCTCTGTAGTGGACCAGCACGGGGACGAGgtcatgaAGTCGTCTCTGGCTGAACCAGTGCCTGAGGGTTATGAGAACGTGAGTGACATCGTTCCTCCGTACAACGCCTTCTCTGCGCAGGGACAACCAGAGGGTGATTTGGTGTATGTGAACTATGGCAGGACGGAGGATTTCTTCAAGCTGCAGAGGGAGATGGGCATCAACTGCACGGGCAAAATCGTCATCGCCCGATACGGCAAAATCTTCAGAGGCAATAAGgtaaAAAATGCCATGTTAGCCGGCGCCAAAGGCATCGTGTTGTACTCGGACCCGTCGGATTACTGCGCTGAGGGCGTGAAGCCGTACCCTGAAGGATGGAACCTGCCTGAAGGGGGCGCACAGCGGGGCAACGTCCTGAATCTGAATGGAGCCGGAGACCCTTTAACCCCCGGCTACCCCGCTAAAGAGTACACTTACAGATTCAGTCTAGACAAGGGGGTGGGGCTTCCTAAAATTCCAGTACATCCTATTGGCTACGGTGATGCTGTCCATCTGCTGAAGAATATGGGTGGAGCGTCTCCGCCTCCTGATTGGAAAGGAGCTCTGAATGTGTCGTATAGTATCGGACCTGGATTCATCGGTGACTTCGCACAGAATAAAGTGCGCATGAACGTGCACAGCTACAATCAGGTGACCCGGATCTACAACGTGATTGGCCGAATCAGAGGAGCTCAGGAGccagatcggTACGTTATATTAGGTGGTCATCGAGACGCGTGGGTGTTTGGGGGAATCGATCCTGTGACTGGAGCTGCAGCAACACACGAGACTGTCAGAGCAGCTGGGAAACTACTACagaaaggcTGGCGGCCCAGACGCACACTGATCTTTGCTAGTTGGGATGCTGAAGAGTTCGGCCTGCTGGGGTCCACAGAGTGGgcagaggaaaatgctaaaatgctccAGCAGAGAGCTGTAGCATACATCAACGCAGACTCTGCTATTgagggtATGTACACACTGAGAATAGACTGCACTCCATCTCTGCATACCCTGGCGTATGACATCACCAAACAGgtgaTGAGTCCAGAGGAAGGGGAGGAGGGAATGACTCTGTATGACAGCTGGCACAAACGAGACAACTGGACTGATAATCGGGACGCGCCCCGgatcaGTAAGCTCGGCTCAGGCAGCGATTTTGAAGCGTACTTTATCAGACTGGGGATTGCATCTGGGCGAGCGAGATACACCAAGAACAGaaAGACGGAGCGGTACAGCAGTTATCCCGTCTACCACAGCGTGTATGAGACGTTCGAGCTGGTCGAGCGTTTCTATGACCCCACCTTTCGGCGCATGGAGGCTGTGACACGTGTGCGAGGGGGCGTGGCTTTCCGCTTAGCCGACGCCCCTGTGCTACCTCTGGACTGTAACGAGTAcgcactcgctctctctcagtACGCACACACCATCCACCAGCTCGCACAGAAACACCCGCAGGAGATGGAGCGCTACGCCGTGACATttgatGCTCTGTTCTCAGCGGTGGACAATTTCACAGACGCAGCACAGGAGTTTCAGCAGCGCCTGAATACACTCGACACAGCCaattctctCTCAGTGCGGATGGTGAATGATCAGCTGATGTATCTGGAGCGGGCGTTTATCGATCCCCTCGGCCTCCCCGGTCGACCCTTCTACAGGCACGTGGTGTTCGCTCCCAGCAGCAACAATAAGTACGCGGGTGAGTCGTTCCCCGGGATTTACGACGCCCTGTTTGACATCGAGAACGCCGCCGAGCCTGAGAGAGCCTGGAGCGAGGTGAAGAGACAGATCAGCGTCGCTGCTTTCACCGTCAACGCCGCCGCTGATACACTCCGCCCCGTCGCCTGAGCTGACCTTTGATCTCTCTGACCTCAAGACAGTCGGTCTGAGATTAAATCTCGAGCCTGAcattttctcccaaatttgAATCGTTGCCAATTCCAAGCCACAAAAATCAAACACCTGTTGCAACATAACAGGACTTAGAGGAGatgctaactgccctcttctacatacatgacCTCAGACATGCCCCGGATGGAGTGGACAGCAGAGCAGAGACAATTACGCAGCTGTGGTTTCGTCACGACCGCTCCAGTGCTGTtcctgagggaaaaaaaaacaatttataaataacatagtgtgtgtgtgtgtgtgtgtgtgtgtatatgttacacacatacactagaTCAGATTTATGAAGCAATTCGGATCTAGGATGtcactacagcactgttgaatttgcgactctgattggtcagaaggtgttgatgaattttctataacagcagctctgacagtagtgcaggtttgaAGGAATACATTATCGCTTCTATGCACAGGGACGCCACGTAATCTAAGACTACTAATATATACAACTCTAAgactacatacatatatatatataatataaatacatacatacacacactgtggtatggtgaagttttctgtaaggagatgtttaacatttatggaacaagtctccagtttcagcgtGTTGTAACCGTAAGTTTTTTTCacaacaggaaagtcttcaggacagaagtcTGCTATAGTTGGTATAACATGCAGCCTAACTAGAGTCTCGTGGATGTTctacaacgttaaatgtaacgtaaaatgataaataattgaaaaaaaaaaaagaaataaattggAATTGGCagtattgctgtggtattagaggaatgaAGCAATTtggatgtgcagttataggaaaataatcaactttggggtcgTAACAGTAATTCGGTTTCAGGTTGCGTAACATCACACCATCTCataattgatcattttcctaaaGCAGCACTGcgccaagtgttttattccttatgcaatcaatcaatcaattagtAATGAGTAACTTTAGaaaaatgtgggttttttttctaattggaAAATTCTTACAATGTACCAAATCGACACTGCACAAGTTGATAAAACTCTGTAAATCTCATGGGGTCTGTGTGATCATCATCTCGGTGTGTGGAGGTCAGACAGTGCGATTGTGTGAGGCGAAAGAGTCGCATTAAGAGAAAGTCGTATAGCGTACCCTGGGTTTTAGTGACGCTCAGGCTAAGAGCCAGAACTCTTACATACCGAGTCACATTTGCTTCTTGTATTTGactacatcttttttttttctttaaacccATCATGGTCTGAATTGACGATATatcagaatgattaaaaaataatgacgAGATACTCGAAAACATTGTGCTCTAAACCAAAGTGGTGTCTGGACAGCATAAGCAGGGAGTCTGTAATCTTTAAAAATTTAGTTCACAATCTGTTATAATCAAAGTTagatttattattgagtttctATAGTTATTAACCTGTTTGATTGGTAACTTGAATTAAAAGGGGTTTAATCCGAACCTCAGAAACATTTAGCCGTATAAACAGCATCAACTTAAATCTAATTTCGCAGAATGAAAGACAACCCTATATTCTTCTTAAGGTTTATTTCATtgacatcatttattaaataagagCTTCTTTACTTTCGCTGGAATCTGATCAGCAGGTTGGAAGAAGACTTTCAGTTCTTCCGCCTATACAAAGTAATTCTCAGCTTCAGTGCTTGCTAGAAGTTTCCAGATCCTAcgttcatgcatattcatagcaCCTCCCATTTTTAATGAGGTCAAAGGTGTCGACATGTTCTTTGgacaaaggtttaaaaaaaaaaaaaggaaaaaaatgaacaaatgattcAGATTTACACGATCAGAGGAACAAAGAATATTCAGTTaccatgaaaatatttcatcacatgttcaataatttacacacatatattaaaGCGCTCAGACACAaattgtgtgttacagtaagcCGAGGAAATGATCTAGAAATATCTAGAAGCATTGTGACTCCTCGTTAATCTGTTAAACCAGACACGACCAGCCATGAGTGTGCACTTCAAGTGTCGAACGTTTAACTCTTGCTAAATTGTGGGCGTCTTCAGATCAACAAGGGTGGAGCTTAAGATAAATTTCATTAGCTAATCACAAACCTGATCACGTGTCCTCGCTGCAAAACTTTCATTCCACTTCACAAAGACAATGAGCTTAACAGCATTAGCTACCCTAGCTACGTTAAACACAGGGCCTTGCTAGCACAGGTTAGCTAATTTTGACGATCCTTCTCCAGCAGTAGgtatgcaaatttaaaatacaatgtTTTTGATACAGTGGTGTCTCTATGATGCATTTTTGATAAAATAACCACTGCCGTAGGTTTCCGTTTtcaattgattaaaacattataaaagtacaataatctAGACGTAATAATAAGACATATAGATTACGTTTAAATGCCTAGTTCACGTCACGTAACACAAGCAGTATTTTATGACAAATAGActttaatatacagtgtgttgAATATTGTACAATACTCAGAGGTATAAAAAAATCTAGAGCTTGGTATCGAATGAAACGATATATTAATACGCCATATCGTCACACTCTTAGTAAGTAGCTAGCCATTTTTTTCAAGCAAGCTAAGTAACATTAAGTAGATTTTTGAGGTGAGGATCAtgcttctgattggctaatcATATTTAAATTAAGCCCCGCCTCTTGTTGACCCAGATGGCGTAATCAGGAGGTGCACTGGATTTATGCATGACTCTCTCCGTGTCCATCTTTTATGGGTCTTCTCTACCATCGAGGGTACATTATATAGACATAAACCCTacgcagtgcattctgggattgCTTGACAACACTAGATGTTCTACACTGTGCTTTCTGGAATAGACATGTAATAGAAAAGCTCCTAAAATAGTGAACAGATGTGCACCAGTGTTGTGTATACCCTAAAGAACACCATTTAGACTCTCTAATGAATACGATGTGGTTTTGGACTTTCAGCTTGCTTGTTAAATAGATAGCTGGATGACTTGCTACCGGAAATAAAGTAAAGGACATAAAACCTAGTTTGAGCACAGCCAATTAAATGCTAAGTGCTGCATTAACTTGAGCCTTCTTctaaagaacttcactcaaggTGGTAAAGGAATTGTCTATAAAATAGCGTCCGAAAGGGTTCAGGGTGACGAAGTGCACAAGGGAGAGTCGATGAGGACACATGGAAATGCAGCAGGGCCCAGaatcagaccttttttttttttagacatttctATTATCTGTAAAAGCTTCAGGAATACTTCAGACGTCTTAATGTTGACTATCCAATCAGCTCAGGAGTCATTATCGTATTACCCATCATGCTtctgtgaatatgaatattcaGAAGCCATCTTGTCCAATTAGCAAACATGCCACAATGAGTTTTCTCATTCCTGTACCCTCTAGCTTCGTGTAGGGAACGGGGCAGTCTGTGAAGGGCAAATGAGACGGAgcgagtgtgtgtcagtgtgtgtgtgttactgagagACTTAGCTAGCACAGGCACTCTGTGAGAGGAAAGACAAAGGACACATTGTGAAGGAATGAAATGGAAgtaggccgtgtgtgtgtgtgtgtgtgtgtgtgagatcatgTTTCATAGTCAGTGTATGGTATGTGTTCTATTtttatcagaaatgtgtgtgtgtctgtgtgtgtgtgtgtgtgtacagtacagaaatacagtgtgtgttgttccGAGTTAGCTCTCTAAAAGTTATTACACTCTCAGTCTCTTTCCTCTACGCGTTCTCCTTTTCTTTATTCTCATTGGTTGAATTAGGAGTGGGCGGGGGCAGGTCGAGCCGCGCCCACGACATCGGCTCCGCCTTCTTCATGATGATCTCAATCTTGGCAGCCATCATGTTCATGACGCTCTTGCTGACATCGATGACCTGCCGGGACACGAGAACAGTGACATCACCTTTACTTTCTCACTGAAACACATCACTAGGCGCACACTGATTACATCATCActgatgttgattttttttttatatttctttgtgCTCCAATTGGTCATCATTTCCCTTTCTTTGCATTCTGACTGGTTGACATTTACCTTTCTCTGTGTTGTGATTGGTCTACATTTACAGATCTCTGCTCTCCGATTGGTTGACATTTACTTTTCTCTGTACTCTGATTGGTTGTCATTTACCGTTCTCTGCTCTTTGATTGGTTGAAAGTTACTTTtctctgcattctgattggacaATGTTTGTCCTTCTCTGTGCTCTGATTgttcaatatttttaatttattaaatgattagtCATCATTTA

Function


GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K01301 NAALAD; N-acetylated-alpha-linked acidic dipeptidase

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU259270 lncRNA downstream 38401 1978042 ~ 1980907 (-) True G218850
TU259256 lncRNA downstream 69757 1949278 ~ 1949551 (-) True G218840
TU259241 lncRNA downstream 101288 1917713 ~ 1918020 (-) True G218825
TU259189 lncRNA downstream 232334 1777746 ~ 1786974 (-) True G218773
TU259184 lncRNA downstream 248856 1770215 ~ 1770452 (-) True G218768
TU259397 lncRNA upstream 192118 2227495 ~ 2266728 (-) True G218950
TU259420 lncRNA upstream 244876 2280253 ~ 2280779 (-) True G218972
TU259357 lncRNA upstream 246024 2281401 ~ 2289859 (-) True scaf4b
TU259360 lncRNA upstream 301375 2336752 ~ 2419491 (-) False G218917
TU259361 lncRNA upstream 301375 2336752 ~ 2419491 (-) True G218917
XM_034310930.1 mRNA downstream 53348 1949981 ~ 1965960 (-) True cwf19l2
XM_034310710.1 mRNA downstream 73152 1925911 ~ 1946156 (-) False gucy1a2
XM_026943576.2 mRNA downstream 73158 1923668 ~ 1946150 (-) False gucy1a2
XM_026943575.2 mRNA downstream 73158 1923668 ~ 1946150 (-) True gucy1a2
XM_026943282.2 mRNA downstream 206227 1798680 ~ 1813081 (-) True pdgfd
XM_026943498.2 mRNA upstream 17412 2052789 ~ 2059593 (-) True tyr
XM_026943536.2 mRNA upstream 166125 2201502 ~ 2203363 (-) True LOC113544627
XM_026943391.2 mRNA upstream 210507 2245884 ~ 2249335 (-) True rwdd2b
XM_034310489.1 mRNA upstream 234729 2270106 ~ 2277717 (-) True sgpp2
XM_026943287.2 mRNA upstream 252236 2287613 ~ 2320915 (-) False scaf4b
trnag-ucc_22 other downstream 49825 1969412 ~ 1969483 (-) True trnag-ucc_22
trnag-ucc_18 other downstream 521897 1497340 ~ 1497411 (-) True trnag-ucc_18
trnag-ucc_17 other downstream 522202 1497036 ~ 1497106 (-) False trnag-ucc_17
trnag-ucc_16 other downstream 523475 1495762 ~ 1495833 (-) True trnag-ucc_16
TU258580 other downstream 864608 1154410 ~ 1154700 (-) True G218302
TU260071 other upstream 580849 2616226 ~ 2629866 (-) False gal3st2
trnag-ucc_24 other upstream 643717 2679094 ~ 2679165 (-) True trnag-ucc_24
trnaw-cca_13 other upstream 648029 2683406 ~ 2683477 (-) True trnaw-cca_13
TU260166 other upstream 852530 2887907 ~ 2963350 (-) True G219642
TU260175 other upstream 871949 2907326 ~ 2911165 (-) True G219651

Expression Profile