RNA id: XM_026943386.2


Basic Information

Item Value
RNA id XM_026943386.2
length 2918
RNA type mRNA
GC content 0.46
exon number 4
gene id kbtbd3
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 5137303 ~ 5142967 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGCGCCAGCCCGGCTAAGAGACCGCTGTCTGTGGTGCTGAAACGAGTCTCCATGCTGATGGatgaagagtgtgtgtcagGTGCGGTCCGACCGATCTGTAACAGTGGCTCAGAACCGAGTTCAGTGCTGCTGGTGTGTGAAGGTCATGGTGATCAGATCCTCAGTGTTCTACGCGCATTCCGTGACAAAGGCACGCTCTTTGACTTCCGCATCCACGTTCAGGATGAGATCCTGCCGTGCCATCGCTGTGTCCTCGCCGCTTGCAGTGACTTCTTCAGGACCATGTTTGAGGTGAACATGCGAGAGCGTGATGGTGGCTCGGTCACACTGAGTAATCTCTCCCCGCAGGCTGTACGCAGCTTTCTGGACTTTGCGTACTTGGGCCAGATGGAAATCATGGAGGAAAACGTCGATATGCTTTTCCAGATGGCGTCTTTTCTACAGGTGAGTGCACTCTCCCAGGCCTGCAGTGATTTTTTAATCCAGACGCTTGACCTCTCCAACTGCCTTCACATGTTGGCCATCGCTGAGGGATATGGCTCGTCTCGCCTTCTGCACTGCGCTGCTGAGTTTGTGATGGCCAACTTCCATGCACTTTCCTCTAGTCCAGACTTCCTGGAGATGCCTGCAGGAATCCTGCGTCGCTGCCTAGCTTCAGATTCACTCAATGTCCCAGACGAAGAAAGTGCACTGCGATCTCTGATCCTGTGGACTGAGCATGACCTGCAATTTCGACGTAGTTTACTTCCTGAGCTTCTCTCGCACATCCGACTGCACCATCTTCCCCCTGCCAGGCTGGAGGAAATGGGCCAGTCCGAAGCACTGATACTGAATAGTGAAGAATGTTCAAGAGCAGTGATGACAGCATTGGCACAAGTGACAGAGTATAGTGGCCTTTTTCCAAACGCCCGTCCATCCACAATATCCAGCTACATATATGTGCACAAAACGGAGGAAAACGGCGAGAAGCACCACACATTCTGCTATGATGTGGCAGCCAACCACTGGCACCAGCTGCCATCCTCTGAGCTTGCTGACCTCCCTGGCTCATCTATTACCAGTTTTGGAGAGAAGCTGTTTGTCTTTGGAGGATGCCGAGGCAAATGTTGCAGGACGGTGCGACTTCACATTGCAGAGCCTGAGCATGAGGCTACGAGGGAAGCATGGTGCTACTGTCCTGTCACTGGAAAATTTGTAGAAATCCAGGCAATGCATTTCCCACGAACCATGCATGTCTCTGTCTCCACCCTGCACCATATTTACGTCATTGGTGGTAAAACTCTTGGAATGCATGGCCTCTTAGATGTGGAGTGCTATGACCCATTAGGGCACACATGGAAGTCTGTGAGTCCATTACCACGCCGGATCTACTTCCCAGAGGCAGCAGTGTGTGGCACCATCATCTACACTCTAGGTTCCGAGCTGGAGACCTCTGATGCCTTCAATCCATCACTGGACTGTTTTTTCCGCTACGATACTGAAGCTAATCAGTGGTGCCAGCTGGTAGCAGAGTTCGGCCAATTCTTTCACGCCACTCTTGTTAAAGCTGTGTCTATTGGAACGACACTCTACCTGTGTGATCTGTCCACATATAAGGTGTACAGATTCTGTCCAGAGACCTGTGTGTGGAAGAGCGAGGGAACTTTTGAGTGTGCAGGCTTTAATGCAGGCGCAATAGGTGTGCAGGGAAAAATCTACATCCTGGGAGGGGATTATTCTCCCGATGAGATCACAGATGAGGTGCAGGTTTATGACAGCAGGCACAGCAAGTGGCAGGAGGTGGCACCGATGCCGTGTGCATTAACTGAGTTTCACTGCCAGGTGATCAGCTTTAACCACTACCGAGATCCATGGAGATGCGAACCTGCTGagaaacaataaacacacaataaatgaTACACTTACTAATACACGGACACTCATATTCTTACAGTATGCATTTATGTTTCCAAAAACACATTTCCACACAGACTTGTATTTCCAATCTCACACTTAggctaaaataataatgtaaaaatgttgtaGCCTTTAATAGAAGTTAGTAAAATCTTTATACATGTTTGCTTTAAGACTCTAGTATTTGCAGCCCttgcttttttgtgtgtagGCTCATGCTTCTGCCAtgactcaaataaaaaaaatctaaaaggcATTTGCGGCAGCAGTCAAGCTCCTCAGTGGTGAACTCCATGGCTGCTGCAAATGGTTGTCAGATATTTTTTAAGGATTCacatactttatttacttttccatgcattttattttcactggcTGTTATACATGCACTTTTATaatcattcattttatatttatttattcagtactttatccttgtcagggtggCAATGGATCCTATCCCAAAAACCCGAGGCAGGAATACTCTACTCCATCATAGGGCACCATGTgcacacaactgcacacactcacttttatatacaatataaacttATTGCATGTTAcaacttttttcactttttaatccttaagcaaggcccttaaacCTCCCTGCTCTGCATCACAACCGACTCTGCGCTTTGACCCCAGattagcattttttatttatttataggcaCCTTTCAGCTTGTACATGCCACTCATTCGGTGCACCTCTTTGCTGGTGGTATgattgtaaattaaattatatttgtcaGATGTTTGGTGGATGTTACATGTCATAAGATAAGAGCAAGCAGATTGTTAGAGCTTTAAAACTGTCAGGTCAACTCCTTCCATGAACTcagtttcccagaacacactgctGCCTACAGACATGGCCGCACTGGACTATGATTCCCAGGAACCATCACCTCTAATATGTTCTCCATCCCCGGACTTCTGATTACTCTCACCTGTTTccaatcatatatatatatatatatatatatatatatacacacacacacacacacacacacac

Function

GO: NA

KEGG:

id description
K10471 KBTBD3; kelch repeat and BTB domain-containing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579502.1 lncRNA downstream 122360 5013148 ~ 5014943 (-) True LOC117599070
TU261338 lncRNA downstream 141609 4948544 ~ 4995694 (-) True G220705
TU261358 lncRNA downstream 166267 4970235 ~ 4971036 (-) False LOC113544632
XR_004579501.1 lncRNA downstream 232006 4902623 ~ 4905297 (-) False LOC117599069
TU261468 lncRNA upstream 199102 5342069 ~ 5342566 (-) True G220816
XR_004579477.1 lncRNA upstream 206713 5349680 ~ 5353368 (-) True LOC117599045
TU261474 lncRNA upstream 261114 5404081 ~ 5404283 (-) True G220822
TU261478 lncRNA upstream 273818 5416785 ~ 5416995 (-) True G220826
TU261494 lncRNA upstream 300525 5443492 ~ 5443702 (-) True G220834
XM_026943570.2 mRNA downstream 23348 5110668 ~ 5113955 (-) True tomt
XM_026943504.2 mRNA downstream 38313 5094843 ~ 5098990 (-) True folr
XM_026943501.2 mRNA downstream 45704 5054916 ~ 5091599 (-) True inppl1a
XM_026943313.2 mRNA downstream 149054 4978933 ~ 4988249 (-) True stard10
XM_026943558.2 mRNA downstream 165784 4912862 ~ 4971519 (-) False LOC113544632
XM_026924418.2 mRNA upstream 250851 5393818 ~ 5403318 (-) True LOC113532789
XM_034310860.1 mRNA upstream 308308 5451275 ~ 5488244 (-) True LOC113532491
XM_026923908.2 mRNA upstream 393231 5536198 ~ 5549047 (-) True si:ch211-149e23.4
XM_034310893.1 mRNA upstream 407452 5550419 ~ 5599308 (-) False nectin3a
XM_026924796.2 mRNA upstream 425251 5568218 ~ 5599308 (-) True nectin3a
TU260468 other downstream 1320516 3740282 ~ 3816787 (-) False LOC113544484
TU260466 other downstream 1320516 3811560 ~ 3816787 (-) False LOC113544484
TU260467 other downstream 1320516 3811560 ~ 3816787 (-) False LOC113544484
TU260175 other downstream 2226138 2907326 ~ 2911165 (-) True G219651
TU261666 other upstream 567131 5710098 ~ 5710891 (-) True G220990
TU261738 other upstream 655018 5797985 ~ 5803878 (-) False LOC113532612
TU261846 other upstream 878253 6021220 ~ 6024311 (-) False dynll2a
trnap-cgg_8 other upstream 2052556 7195523 ~ 7195594 (-) True trnap-cgg_8
XR_004579456.1 other upstream 2249448 7392415 ~ 7463499 (-) True zgc:77784

Expression Profile