RNA id: XM_026943411.2


Basic Information

Item Value
RNA id XM_026943411.2
length 4376
RNA type mRNA
GC content 0.48
exon number 31
gene id LOC113544562
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 4685721 ~ 4858407 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agcgtgtgtgtgttggtacATGTGAACTTGCTGCTCTGTCCACAACTTTCAGTTGTCCTCTGTCTTCTCAGAATGTCACAACGAGGACAGCAAGTCTTCCTGAGAGCCGACGAGCCGCCTGCGTCCTCACACGCCTTTCAGTGCTGAGTGTCAGTAGCTCACATCCTCACCATCCCAATGCAGAGGCAGCGGGGCCACGATTCGTCCGACACACACTGCGTTAGCGTCCAggatgCATTGCTGCGGCTGGCCTCCATTGTTGATGCGAGCAGCCTCCGGGCGGCCATTAAAGAGACACTGGAGGCTGTGCTGCCAAAAGTGgaGAGTGTGTTCGTGTATCTGCTGGAGGCCGAGTCTCAGATGCGATGTGAAGATCCACCTCATGACCTTCACGCAGAAGGCAAGCTCAGGGAGGTGTTTGTGCAGAAGaagagagcagtgtgtgtcGGGCTGCCATCAACAGAGCTGCAGGAGAAGCAGAGGACAAGCCTGGCAGCACCTCTCCCACCTGAGAagcgagTTGTGATCATTCCGTTGGTGGATGAAGATGAAGACAAGGTCATGTCTCTCATTTTGGTTTGCTGCTGTCAGCTCACTGACCAGGATGAGCAAAACCTTAATCTTCTGGAGAAAcatCTCATCGTTGCATGTAAAAGAGTACAGGCGATACAGAGGAGTGCGATGCGGCCAGAAAcccaatcccacaatgcaccactcAATGCTAACACCATGAacgagaaagagaaagactaCAGAGAACTGGACCGCAAgattctgcagctctgtgGTGAGCTGTATGATCTGGACGCAGCATCACTTCAGCTCAAAGTCATCAACTACCTGCAGAAAGAGACCCAGTCTCAGTGCTGCTGTCTGCTGCTGGTGTCTGAGGATAACCATCAACTATTCTGTCAGGTGGTTGGGGATAAAGTTCTGGAAGAAGAGATCAGCTTTCCtCTGATGTTCGGACGCTTTGGGCAGGTGGTGGAGAAAAAGAAATCCATCACCTTACAGGATGTTAGccaggaggAGAGAAGGCAGCTCAGCAGTATGTTGGGGTTTGAAGCTCACTCCATGCTGTGTGTGCCCGTCGTGAGTCAGGCTACTGCCCAGGTGGTGGCGCTAGCATGCACTTTTAACAAGAAGGGAGGGcagaaatACTCAGCAGCAGATGAACACATGATCCAGCACTGTTTCTGTTACACCTCCACGGTGCTCACCAGCACACTTGCCTTCCAGAAGGAGCAGAAACTAAAGTTTGAATGTCAGgctcTGCTCCAGGTGGCCAAAAATCTCTTCACACACCTTGACGACGTGTCGGTTCTACTACAGGAGATCATTGTGGAGGCTCGGAACCTGAGCAATGCTGAGATtTGTTCAGTGTTCCTGCTCGACCGTGTCAGTCATGAACTCGTGGCCAAAGTGTTCGATGGTGGCGTAGTGAACGATGATGAGAAGGAGTTCCGTATCCCAGCAGATCAGGGCATCGCCGGTCATGTGGCCACTACGGGAAAAATCCTCAACATTAAGGACGCATACTCACACCCACTTTTCTACCGTGGCGTGGACGACAGTACGGGTTTCCGCACACGCAACATACTCTGTTTCCCCATCAAGGACGAGAATGGAGATGTTATTGGTGTTGCCGAGTTGGTGAATAAGACAAATGGTCCGTGGTTTAACCGGTTTGATGAGGACCTGGCCACAGCCTTCTCCATCTACTGCGGGATCAGCATCGCCCATTCTCTGCTGTATAAGAAGGTACATGAGGCTCAGTTCCGCAGTCACCTGGCCAATGAGATGATGATGTACCACATGAAGGTGTCTGAGGAGGAGGTGAGCCGGCTGCTGATGAGAGGAATCGAACCTGTACACAGCCTCCACCCGAGCTTCTCTCAGTTCACCTATACACCCCGCTCCCTGCCCGATGACACCACGCCCATGgGAATCCTGAGCATGTTTGAGGATATGGGCTTCATAAACACCTACAAGATTGACCTCCACACTCTGGCCAGGTTCTGTCTGATGGTGAAGAAGGGCTACAGGGATCCTCCTTACCACAACTGGATGCATGcattctcagtctctcactTCTGCTATCTGCTTTACAAGAACCTGGAGCTCAACAACTACCTCgaGGACATTGAGATCCTCGCTCTCTTTGTGTCCTGCATGTGCCATGATCTGGACCACCGAGGAACAAACAACTCCTTCCAGGTGGCCTcgAAATCTGTTCTTGCAGCCCTTTACAGCTCTGAGGGATCAGTTATGGagaGACATCACTTTGCTCAGGCCATCGCCATCCTGAACACACATGGCTGCAACATCTTTGAAAAGTTCTCCAGAAAGGACTACCAGAGGATGCTGGACCTGATGAGAGACATTATTCTGGCCACTGATTTGGCTCATCACCTGCGCATCTTTAAAGACCTGCAGAAGATGGCAGaggCTGGGTATAACCCGAAGAGCCAGACGCACCGCAGCCTGCTGTTGTGCCTACTGATGACCTCTTGTGACCTCTCGGATCAGACCAAGGGCTGGAAGACCACCAGGAAGATTGCTGAGCTGATCTACAAAGAGTTTTTCTCTCAGGGTGATCTggagAAAGCGATGGGGAACAGGCCCAGTGAGATGATGGACAGGGAGAAGGCATACATCCCCGAGTTGCAGATCAGCTTTATGGAACACATCGCAATGCCCATCTACAAGCTGCTGCATGAGATTTTCCCACGTTCTGCAGAACTCTACGAGCGAGTGGCAGCGAATCGCGAGCAGTGGACCAAAGTTTCACACAAGTTCACTATCCGCGGTTTACCCAGCAACAACTCACTGGACTTCCTGGACGAGGAGTACGAGCTGATGCAGGCGCAGGGGGCATTCGGGGACGACAGTCACCGCATGAACGGCTGCCTGGATGACGAGTGCAGCAAGACGGACCAGTGAAACTCCTGGAAGCGTAATGTTTTCACTCCGAAACAGGTAGACGTTGCGCCTTTATGTCGTCTCCGGAAGGACAGCGTTGTAGAGGGAACAGACTGGGATGTGGTTAGATGACTGTCGAGACACTGGTGTTTCGTGGGCGGAGCTGATATGCTGCAgataatgatgtcatttcctgccATTCGAACCATTTGCGCAAGCAGAACACTTCACTTGTCGTGGGGCCGGGGGCGGAGCCTCATGTTTTCTTGTTGAATATTACAAAGGAtatgttctttaattatttacttaacGTTTTGATAGCTGAACAAAGCCTCagtgtttgattttatatattttttctgtcctGCTGTAAACATCATAAACTCCATCCAAATGTATAGAATTGAATGTTAGTTTATAAAATGAGAAATGTTTCTTTGAGTAAGCATCGCTGTAGAAATGTCATCGTCGCAAGCTAGCTCTTTAATTTTACACACAGAAtgaggtttttatttaaactgtaaaGACAATCAAATTAGAAGTCCTTTGCGTCCCTTTTTAAATCCTCATGAGTGCGACTTCCCGTGAGGAGAGAAGAACATGAGATGAGGTGAGATTTTAGTGAAcgtcaacaacacacacacactttagtaaAGCATTCACACTAGTAACTTAACAAAGCAGATTGTTGTGACTTTTGTCCCAGCTGTTCAAATCATTCTCCTAAAAGGCTGCTGAAATCCCTCATCCTGTCACGTGACTCTGCTTCAGTTCAGGTAAGCTGAAAAACTTGCACTCACTTTCCAGGCCGGAATTCCCCCCACAAGCTCCTGTTGGAACAGAGTGCattatggctgtgtttatgAGATGAGAAATATAACATTTACCTGAACactgtgtagttcagtgtttaTCATCATGATTGACCCAAAGACTGCAAGGTAAACTGTGTCTGATGAATTTAAGGCCACTTCAGTACAAATCTCCTGACTTCTGGGAACGTCGCACCAGCAGCGTTCTAATTTCTTGTATATAACATTATCAGAGGAATTTTAAGGGCTACGGCGCCCTCTGAGGCACGTGAAGAGGTTCATTTCTCAGGCGGAAAACAGAATTATGTATAAATATGGATTTGCCTTATCACGTATATGTGTTGCCTTTTTGAGTAGAGttaaacactgtatacacacacacacacacaaacacacagttttaaAGCTCAGCTCAGTGTGTGCAGGCATGTTAACATGGGTGTGAAAGTCAAACCCAAGGCTAAATCTGAGtctgctagcatgctagctcgTGTAGCGTACGAATTAGATTACAGTAATGAATCTCTAATCCAATCAATATAACAGTTTAATATGTTTACAATTAATAAtgttagatatatatatatatatatatatatgggtgtgtgtgttttctcatatatacacaccccaagcagccat

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261237 lncRNA downstream 69090 4616282 ~ 4616632 (-) True G220621
TU260949 lncRNA downstream 96169 4589344 ~ 4589553 (-) True G220362
TU260946 lncRNA downstream 121594 4563720 ~ 4564128 (-) True G220359
TU260838 lncRNA downstream 293486 4389272 ~ 4392236 (-) True G220267
TU260836 lncRNA downstream 368101 4314866 ~ 4317621 (-) True G220266
TU261315 lncRNA upstream 61850 4875644 ~ 4883440 (-) True G220690
TU261318 lncRNA upstream 74112 4887906 ~ 4888446 (-) True G220693
TU261319 lncRNA upstream 75070 4888864 ~ 4889213 (-) True G220694
XR_004579501.1 lncRNA upstream 88829 4902623 ~ 4905297 (-) False LOC117599069
XR_004579500.1 lncRNA upstream 88829 4902623 ~ 4905297 (-) True LOC117599069
XM_026943489.2 mRNA downstream 159908 4501781 ~ 4525814 (-) False LOC113544596
XM_034310760.1 mRNA downstream 159919 4501781 ~ 4525803 (-) False LOC113544596
XM_026943491.2 mRNA downstream 159923 4501781 ~ 4525799 (-) False LOC113544596
XM_026943492.2 mRNA downstream 161794 4501781 ~ 4523928 (-) False LOC113544596
XM_026943490.2 mRNA downstream 161794 4501781 ~ 4523928 (-) False LOC113544596
XM_026943554.2 mRNA upstream 84156 4897950 ~ 4971519 (-) False LOC113544632
XM_026943556.2 mRNA upstream 84156 4897950 ~ 4971519 (-) False LOC113544632
XM_026943555.2 mRNA upstream 84156 4897950 ~ 4971519 (-) False LOC113544632
XM_026943553.2 mRNA upstream 84156 4897950 ~ 4971519 (-) False LOC113544632
XM_026943549.2 mRNA upstream 84156 4897950 ~ 4971519 (-) False LOC113544632
TU260468 other downstream 868935 3740282 ~ 3816787 (-) False LOC113544484
TU260466 other downstream 868935 3811560 ~ 3816787 (-) False LOC113544484
TU260467 other downstream 868935 3811560 ~ 3816787 (-) False LOC113544484
TU260175 other downstream 1774557 2907326 ~ 2911165 (-) True G219651
TU261666 other upstream 896304 5710098 ~ 5710891 (-) True G220990
TU261738 other upstream 984191 5797985 ~ 5803878 (-) False LOC113532612
TU261846 other upstream 1207426 6021220 ~ 6024311 (-) False dynll2a
trnap-cgg_8 other upstream 2381729 7195523 ~ 7195594 (-) True trnap-cgg_8
XR_004579456.1 other upstream 2578621 7392415 ~ 7463499 (-) True zgc:77784

Expression Profile