RNA id: XM_026943492.2


Basic Information

Item Value
RNA id XM_026943492.2
length 2365
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC113544596
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 4501781 ~ 4525814 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gttctgctTCTCTTCTCTATTCTCTTTAATGATCTAGCTCTAATATGTGTTTGACTTTGTGCTCACATGGTTGTCTTGCTGTTAAATGCTCGTCCATGTCCATCTACAGCTAGTACATTAGGCGTACAGTTTGATTTAATGGAAACTGAAAGCATTCAAGCTTTCCTAAGAGAGATGGCGTGGCACTATGGGTAATGTAGGGTGTATGTAGTGACCTAAGTCCCTCGTGAAATCCATCCTGCTGTGACTGAGCTTCTACCTTAAAGAGATCATCATGGAGAAATTGTATATTTCCACCTTATTGTATAGAAATTGTATAGATCCACCTTCACAGAGTAGAACCGGTCTGGTGTCTCCGTCACCAGTGAGGCATGTTGTGCCTGTTGTGTGAGAGAGGGCATAACACGGGCGTGGCCCAGAGAAATGTCCTCAGGGTGAACATGGTGAcatcacagagcactttatttgTTTGAAATCATTGCACTTACAGGAAAGCTGTAAAAGTGTTTGATCTTAATGCTGGTTAATGTTTAGGAGCAGAGTTGTGAGCAGGATTTGAAAccttttgtgtgtatgtagcgTGCATGAACAGTTTTTTCCCTGACTGGTTATGTTGTATCAGTTGTGTTTTAGTTTTCTCAGGGGACCCGAAACTATGGCTGGAAAAAGTACAGAGAAATGTCCTTAAGTAAACGGGCGATTCCCCACAAATGGGAACCTTACCATGGAAATTAAAGCTGTGAGCACAGGAACAAAACTACTTTTACGGAAAGGCATCGATGTACCATGCCGCTAGTGAAATGGAGTCTCTTTTTCTCCAGGAGGAGAACAGGAGGCATGTGGGCgtagagggaggagaggagtggAGGAAATGGAGGGAGTGAttgcagtgtgtctgttaccacACTAATGAAAGGAAGACGTCCTCGCCGCAAAACAGCCAACGCATCACACCAGTCACAGGACcatgaagaagagaaagaagaagataTCACTTCCTCCTTGTGCCCATTATGTGGGCGGGCTTTTGACATACCCCTCCTCCTACCCTGCGCACACACTCTATGTGGGCAGTGCTTAACAGAGAAGGCGAGATTAGATAAACGCAAGTCTGCACTAAGAACTGCAGCACAGGCGTCTTGTACGATCTGTGCTGTCTTCTGCCCGCGCTGTTGCCATGGCGTTGAATTGCCCTGTTCTGATTGGTCGACTGCTACTGCATGCCTTCCCCTTGACCCTACAGTGACCTTTCACTCGGAATGTAGTGCACAGGACGAGGATGAGAATGAGGAGGGGGTcaagaaaaaaactgcacaGAAACCAGGAGGCGACGTGGATCTGTCCGAGGAGGAGATGGAACGTTCCGTCTCAGGTCTACTCTTTACTCTAGACTCCTCCTTCATAGCCCCACCCCTCCAGCTCACTAACTCCGCCCTCACGGTCACCTTCAGGGACTCTGGCCCTCAGGCTGAGGGTCGTGACCTCTGTGCGTCTCTCCCTCaggtgtgtgctgatgtggagATCCTCAGAGGACAGTACTACTGGGAGGTCGATGTGTGCAACAGCGCCCTCTACCGCATcgGTGTGAGCTCATTGGCTGGTGGGGAGGCGTGGTGGTTTGAGAGGCATGGCTCTGGATTCCATGCTGTGTTCGATGGCAGGCGCGAGCTCCTCCCCTCAGTACCGCCACATCTTAAAACAGTGGGCGTGTTCTTAAATGTGGGTGGGGCTTCCCTCACATTCCACAACCCATTAACAGAAGAACTTCTTGCCACGATCCCATCCGTCTTCACTCCTCCTCTTTCCCCCGCATTCCAGCTGGGCCAGGGAAGGCTGAAGCTCCGCCCGGGCCTGCCTCCACCCAACCATGTCTTTCTTAGCCGCAACTCTGCCTATCGTGGACCTGAAGGGGCGGGGCGAGGGCGGTGGAGGCGGGACGTTGCGTTTGGATCAGTGAGGGCCGTGATACAGAAGTTTGAAGAAATGGCAGCTTCAGATTCCGATTCAGGCCTGATGTCGAGCTGTAGCTCCAACTCCACGCTGACCTCCATCCCTGACCCGAGTCCAGAAACTTCCACACATCCTCCTGCACAAGAACACTGAAGAACCTGAGAGTGCTGTCTACTGCCTATTTCATGATCATTTGGACAAGATAACAATCCAGAAACTACTCTGCTGCTTCCTGTACAGTATCACTTATTATCTGCAGTGCTAACAGTGAGCGAGTGATATCTGAGGTCATCTGTCATGCTCTGTCAAAACAGTTCTCCTTCACTGCATTAATACAATGCTAATTAACACTAGCATCTTTGTAGCCTAACAAGTTCGCtaatcaacaaataaataaataaacaagctaACCGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260838 lncRNA downstream 109545 4389272 ~ 4392236 (-) True G220267
TU260852 lncRNA downstream 176636 4281004 ~ 4325145 (-) False G220278
TU260836 lncRNA downstream 184160 4314866 ~ 4317621 (-) True G220266
TU260867 lncRNA downstream 196335 4304359 ~ 4305446 (-) True G220290
TU260851 lncRNA downstream 219321 4281004 ~ 4282460 (-) True G220278
TU260946 lncRNA upstream 39792 4563720 ~ 4564128 (-) True G220359
TU260949 lncRNA upstream 65416 4589344 ~ 4589553 (-) True G220362
TU261237 lncRNA upstream 92354 4616282 ~ 4616632 (-) True G220621
TU261315 lncRNA upstream 351716 4875644 ~ 4883440 (-) True G220690
TU261318 lncRNA upstream 363978 4887906 ~ 4888446 (-) True G220693
XM_026943284.2 mRNA downstream 10101 4480547 ~ 4491680 (-) True chrd
XM_026943283.2 mRNA downstream 10104 4480547 ~ 4491677 (-) False chrd
XM_034310571.1 mRNA downstream 41074 4392776 ~ 4460707 (-) False LOC113544498
XM_026943406.2 mRNA upstream 161793 4685721 ~ 4858407 (-) True LOC113544562
XM_034310565.1 mRNA upstream 161794 4685722 ~ 4858044 (-) False LOC113544562
XM_026943409.2 mRNA upstream 161794 4685722 ~ 4813831 (-) False LOC113544562
XM_026943411.2 mRNA upstream 161794 4685722 ~ 4813794 (-) False LOC113544562
XM_026943408.2 mRNA upstream 161794 4685722 ~ 4810719 (-) False LOC113544562
TU260468 other downstream 684994 3740282 ~ 3816787 (-) False LOC113544484
TU260466 other downstream 684994 3811560 ~ 3816787 (-) False LOC113544484
TU260467 other downstream 684994 3811560 ~ 3816787 (-) False LOC113544484
TU260175 other downstream 1590616 2907326 ~ 2911165 (-) True G219651
TU261666 other upstream 1186170 5710098 ~ 5710891 (-) True G220990
TU261738 other upstream 1274057 5797985 ~ 5803878 (-) False LOC113532612
TU261846 other upstream 1497292 6021220 ~ 6024311 (-) False dynll2a
trnap-cgg_8 other upstream 2671595 7195523 ~ 7195594 (-) True trnap-cgg_8
XR_004579456.1 other upstream 2868487 7392415 ~ 7463499 (-) True zgc:77784

Expression Profile