RNA id: XM_026943530.2


Basic Information

Item Value
RNA id XM_026943530.2
length 7976
RNA type mRNA
GC content 0.50
exon number 33
gene id LOC113544624
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 148086 ~ 242003 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGGAGAGATCGCCGGGGAGCATCGCCACCACTCCTGCACGGAGCCTCGCCTGGCCGAGCACTGCACCGTGCACACGGCGGGATTGCACAACATTCCTCTGAAATATACCTGCTATTTATGGCATGTGGCTGATAACATTACTCCTGCTGTATTCTTTTAAAGAAGtgaacagtgagGATGTGGTCTCGACACGGCTGTACTTTGTGAACGCCTCCCTGCAGAGAGTGACCTTCTCCAGCTCAGTGGGGGTGTCCCTGCCCTGCCCAGCAGGTGGCGCCCCCCATGCAGTCCTCCGCTGGTACCTGGCTACTGGCGACGACATCTACGACGTGCCCCACATCCGCCACGTCCATGCCAACGGCACGCTGCAGCTCTACCCCTTCTCTCCATCTGCCTTCAACAGCTTCATCCATGACAATGACTACTTCTGCACTGCAGAGAACCAGGCTGGCAAGATCCGCAGCCCCAGCATCCGTGTCAAAGCAGtgttcaggGAGCCATACACGGTTCGTGTGGCCGACCAGCGGTCCATGCGGGGCAACGTGGCTGTCTTCAAGTGCCTCATTCCTTCAGCCGTGCAGGAGTATGTCAGTGTGGTCTCCTGGGAAAAGGACACCGTTGCCATTGTTCCAGGTAACAGGTTTTTCTTGACATCATATGGGGCCCTGTACATATCGGACGTGCAGAAAGAGGATGCGCTTTCTACTTACCGCTGCATtaccaaacacaaatacagtgGAGAGACCCGGCAGAGCAATGGTGCTCGTCTCTCTGTGTTGGATCCTACCGAGTCCACACCCTCAGTGATGGACAGCTTCCAGTCAGGCGAAGTGCAGGTGGGTCGCAGCGTGGAGTTGCCATGCATTGCCTCAGGCTTCCCCAATCCCACTATCCGTTGGCTGAAGGATGGCAGGCCACTTCCGGCTGACTCCCGCTGGACCAGGCGTCTCACAGGCCTTACCATCAGCGACCTACGCATGGAGGATTCAGGCAACTACATCTGTGAAGTCACCAATAGCTTTGGCTCCAAGGAGGTCACAGGATACCTCAATGTGATAGAGCCACTAAGGGTCACTGTCTCCCCTAAAAACTTGAAGACAGGTATCAGCAGTACAGTGATCCTGTCCTGTGCTGTTCAAGGTTCCCCTCATTTCACTGTGTCCTGGTTCCGGAACACAGAGCCTGTACTTCCTGACCAGCACTTCTCCATTCAGGGCACCAACAATGAGACTCTGTTCATCACTGCTGCCCAGAAAAGACACTCAGGCGCGTACCAGTGCTTTGCTACTCGCAAGGGTCAAACCGCCCAGGACTTCTCCATTATATTGCTGGAAGATGGCACACCAAGGATTGTCTCATCCTTCAGTGAACGTGTGGTGGCACCAGGCGAACCCTTCTCTCTAATGTGTGCAGCCAAAGGTGCCCCTCCACCCACCATCACTTGGACCCTGGATGATGAGCCAATCGCTAGGGACTCGGCGCACCGGGCCAGTCAGTACACGCTCTCGGACGGCTCCACTGTATCGCATGTTAACGTCAGCAACCCACAGATCCGCGACGGGGGCGTGTACCGCTGCGCTGCACGCAACTCGGCCGGTAGCGCCGAGTACCAAGCGCGCATAAACGTAAGAGgccCCCCAAGTATCAGGGCCATGCGCAACATTACAGCCGTGGCTGGGCGCAACACCTTCATCAATTGCCGTGTGATCGGCTACCCATACTACTCCATCAAGTGGTATAAAGATGGCATGCTGTTGCCAGACAACCATCGGCAGGTGGTATATGAGAATGGTACACTCAAACTCAGTGATGTGCAAAAAGGAATGGATGAGGGAGCGTACCTGTGCAGTGTGCTCATCCAACCCCAGCTCTCTATCAGCCAGACCGTCTATGTCACTGTCAAAGTTCCCCCTCTCATTCAGCCTTTTGACTTCCCCCCTACTTCAATTGGTAAACTGATGTACATAGCATGCGTAGTCTCATCTGGGGACATGCCCATCCGGATTACATGGCGCAAAGATGGTCAGGAGATTGTGTCTGGCACCTCTGGTGTCACCATTGAGACCAAGGAGTTCATGAGCTCACTGCAGATCTCCAAAGTTTCCCTAAAGCACAACGGCAACTACACTTGCATCGCCAGCAATGATGCAGCCACCGTCAGCTCTGAAAGGCAGCTTATAGTCACTGTCCCCCCTCGTTTCCGAGTTCAGCCTAACAACCAAGATGGGATCTATGGAAAGTCTGGGGTTCTAAATTGCTCTGTGGATGGTTATCCCCCTCCAAAGGTCATGTGGAAACATGCCAAAGGTATTGGAAATCCACAGCAATACCATCCAGTTCCTCTGACTGGCCGCATCCAGATCATGCCCAATGGTTCTCTTCTGATCCGACATGTTTTGGAGGAGGATCGTGGCTACTATTTGTGCCAGGCCAGCAATGGTGTGGGCTCAGATATCAGCAAGAGCATGTTGCTGACAGTCAAAATTCCAGCCATGATCACCTCCCATCCTAACACAACTATGGCTATAAAAGGCCAGAATAAAGAACTAAACTGCACTGCCCGGGGTGAGTACCCTATTATCATTCGCTGGGAACGTGGGGACACTGTCATCGACCCTGACCGTAACCCTCGCTACTCAATCACCACTAGCCCCAATGAGAAGAGTGATGAGGTGATTTCCACGCTGAAGctgaAGCCAGCTGAGCGTGGGGACTCTGTGTTCTTCTCATGTCATGCTATCAACTCCTATGGCGAGGGCCGTGGCCTCATTCAGTTGACTGTGCAAGAGCCCCCTGATCCTCCAGAGTTAGAAGTACGTGAGGTAAAAGATCGCAGTATGAACTTAAGATGGACCCAGAGGTTTGATGGGAACAGCATCATTACCAGTTATGATATtgaatacaaaaacaaatctgATCCATGGGAATTGAAACATGCTACACGCAAAATTTCCCCAACCAATAACCAGGCCAACATAGTGGAGTTGCATCCTGCTTCTGTCTACAGCATTCGTATGTACTCGTACAACAAAATTGGCCGTAGTCAGGCCAGCAAAGAGCTCACTATCagcacagaggaagcatCTCCTGATGGGCCACCCATGGACGTCATTCTGCAGCCTATGACATCACAGAGCATCCGTGTTACATGGAAGGCTCCCAAGAAGGAACTCCAGAACGGCGTGATCCGTGGCTATCAGATTGGCTACAGAGAGAATGGGCCTGGCAGTAACGGCCAGTACAGCATAGTGGAGATGAAGGCAACGGGTGACAGTGAGGTGTATACACTGGATAACCTGAAGAAATTTGCCCAGTATGGAGTGGTTGTTCAAGCCTTCAATCGAGCTGGAACAGGTCCATCCAGTTCTGAGATCAATGCTACCACACTAGAAGATGTGCCCAGCCAGCCTCCTCAGAATGTTCGGGCCATCACAGTGACATCAGATGAGGCAGTGATTACATGGTCAGAGCCTCCGCGGATGACCCTAAATGGGGTCCTGAAAGGTTATCGTGTGGTGTTCTGGTCCCTCTTCCCTGATGGAGAATGGGGTGAGATGCAGAACATTACTACAGTACGTGAGCAAGTGGAGTTGAAAGGCTTAGAAAAGTTCACAAACTACAGTGTCCAGGTGTTGGCCTACACACAGGCAGGGGACGGTGTCCGCAGCAATGTTCTCTACATACAGACGCGAGAGGACtACCCTGGCCCTCCAGCAGGCATCAAAGCTGTCCCCTCCTCTGCCAGCAGTGTTGTGGTATCATGGCTCCCTCCGAACAAGCCAAATGGCATCATCAGGAAATACACCATTTACTGCTCCAGCCCCGGCTCAGCCCAACCAGCTCCCAGTGAATATGAGGCAAACCCAGAAGTGCTGTTTTACCGCATCACCCACCTGAATCAAGGACAGCAGTACCTTATCTGGGCAGCAGCTGTTACCACTGCCGGTCGGGGAAACATCAGCGAGAAGGTCACTGTGGAACCTGCTTTAAAGGCTCCTGCTAAGATACTATCTTTTGGAGGTACAGTTACCACTCCATGGATGAAGGAGGTACGGCTGCCATGTAGTTCAGTTGGGGAGCCAACTCCCACAATTAAATGGACCAAAGACAGTGAGAACACTGCTATTCCCGTCTCTCAGGATGGCCAGCGGAACATTCTGGCAAACGGGACACTGTTGTTGCGCTCGGTAAAAGCAGAGGATTCTGGGTACTACACCTGCACAGCCACCAACACACTAGGATTCGATACCATAATTGTGAACCTACTAGTGCAAGTCCCTCCAGATCAGCCTCGTTTAACAGTCTCCACCACCTCAACCTCCTCTATTACTCTGGCCTGGATCCCTGGAGACAATGGAGGAAGCTCCATCAGAGGCTTTGTGCTGCAGTACTCTGTGGATAATACGGAAGAGTGGAGAGATGTGTTCATTAGCTCCACTGAGCGCTCTTTCAAGTTGGATAACCTCCGCTGTGGCACCTGGTATAAGGTCAAGCTAGCTGCCAAGAACAGCGTGGGAGCTGGTAGGATAAGTGAAATCATTGAGGCGAAGACTCATGGCAGAGAGCCCCAGTTCAACAAGGACCAGCCCCTGTTCACCCACATCAACTCCACCCATGCTCGGCTTAATCTGCAGGGCTGGAGCAGTGGTGGCTGCCCCATCAATGCTGTGCTGCTTGACTTCCGGCCCAAAGGCAGCTATGCCTGGCAAAGCATACGCACCAATGGCACAACCGATGTCTTCCTGGCTGAGCTGCGTGAAGCCACCTGGTATGAGCTGAAGATGAAGGCCTGCAACAGTGCTGGCTGTGGCAACCAGACCTCCCAGTTTGCTACACTAGACTACGATGGCAGTACCATTCCCCCAATCAAGTCTGCACGTGGGGAAGGCGATGATGTAAAAAAGCTGTTCTCCATTGGCTGTCCTGTCATTCTAGTTACATTGGGCATGGCCCTCCTCTTCATCATTCGAAAGAAACGCAAAGAGAAGAGGCTGAAGAGACTTCGGGATGCTAAGAGTTTGGCTGAAATGTTGATCAGCAGTAAGAACAATCGCAGTTTTGACACCCCAGTAAAGGGCCCACCCCAGGGGCCACGGCTGCACATAGATATACCACGTGTACAACTGCTTATTGAAGATAAGGAGGGCATCAAGCAGATTGGTGAAGACAAAGCCACCATTCCGGTGACAGACACAGAGTTCAGCCAATCAGTAAACCCCCAGAGCTTCTGCACAGGCGTGTCTGTGCATCATCCTGCCCTCATTCAGAACACTGGCCCCTTAATTGACATGTCTGATATTAGACCAGGAACCAATCCAGTGTCAAGGAAGAGTGTTAAGTCAGCTCACAGTACAAGGAACCGTTACTCAAGCCAGTGGACCCTGACAAAGTGCCAGGCATCCACACCTGCCCGCACCCTTACCTCTGACTGGCGTACTGTCGGCTCCCAGCATGGTATCACTGTAACAGAGAGTGACAGTTATAGTGCCAGTCTGTCCCAGGACACAgACAAGGGCCGTAACAGCATGGTTTCGACAGAGAGTGCTTCCTCTACATATGAGGAACTGGCTCGCGCTTACGAGCACGCCAAGCTGGAAGAGCACCTGCAGCACGCTAAGTTTGAGATTACAGAGTGCTTCATTTCAGACAGTTCTTCGGACCAGATGACCACAGGTACCAATGAAAATGCTGACAGCATGACATCAATGAGCACGCCATCCGAGCCAGGCATCTGCCGCTTCACAGCATCTCCACCAAAACCGCAGGACTATGACCGTGGCAAGAATGTAGCGGTGCCAATTCCACACCGTGCCAACAAGAGTGAGTACTGTAATCTCCCCCTTTATATGAAGACAGAGCCATTCTTCCGCAAACAAGCTGAGCTACATGACCCATGCCCAGTGGTGCCGCCACGTGAAGCTTCTATTCGAAGTTTGGCGGCTCGTGCCTACCACACACAGGGCCGCCACATGACATTAGACCCATCCAAACAGCAGGCCCTGACGCTCAGCCACGGTGGCTTAAGTAGCCTAACCAGCTCAGGAGCATCAGGGCCagcctccagcaccaccacaggTGGCTCCAGCATCAGCTCGGGCACATCCACATTGCCCCAGAGGACTCTTACCATGCCcagctcctcctccacctcctcagCCGGCCAAAGCACTGGAGCTGCTGGAGCTGCAGCTGGTGCTGTGGCCAGTTCTGGCTCCACAGGGGGAGGTGGCGTGAGCAGCAGCTCCAAGGTTGGTGGTTCAAGAGACTCTCTGCTGGAGAGCAGCTCATCTGGATTGGGCAGACTGCAGAAGCAGAGTGCTGGGGCGTATTCAAAGTCCTACACACTGGTGTAGGCACTGTTCTCCCTCCtccacacacataaaaacatatataattgCATACATTGAGATACATTTGGTGTCTGCCTGGCACAAGGTGGTGAATGAACTGTGCACTGACTGGACTTATCCACCACAGGGGTCTCTTTCGTACTGTCcctcttgttctttctttctctcccttgcTCCCATTTCCACCCTAACCtatttttctctatttgttcTTTCCCCCCTCTTTTTCACATAATATATTCGTCCTTTGGCCATCTGTCTTCAATTTTACTATGCCAAacctatatttttttctcttttctcctttttgttcactttgatttatttttccactgaAGACACCTTGGACCTTATGCACAAATTACATTTGATGTGCACTTGTTAATTTGACTACCTGAGAGTAGGAAAATTcaacagttttaaaatatatattgtttcaCACTAATATGTCTAGATGTTTTTAAGGAGataaatatgtttcttttttatgtctCTTGCAAACGAATAAGCATATTGCGATGCATTGCCTCGGAAGTGCTTATGCATAAAAGAAAAGCAGGCTTGGtgtcttttttcccttcctAGTCAGGCTGGTCTGGACAAGTCCGTGATCGTGGCGTATGCTGATAAAGTTAagtatttggatttttttcatacAGCTGATAAACACAGTACAAAGTGTTAATgactattttaaaaacaaaactgaaaaagaaaaactggagCCATTTCACGgaggatggattttttttcccattgtttatttatttatttatttatttattttaaatttctagACTTTTCTCAGGCCTTCGCATGTGGGTCTGtctgagtgtgcatgtgtgtttatatatgtaagtatatatgtacacatgtTATAGGCACACATCATCAGAAGGCCCAAACATTTGGGTTGGATCTTTGGggacagaagaaaaaacaaataggGGTGTAAAGCTTTTCCCTGTATTCTGCTCTGCTTCAATATTGAGTTATAGCACTTACTGTCAAGCGATAGAAAATGGAcaactaataaattaaaaagagtGAGTTCAAGAGGTGGACAGACCTACCATGCAgcaaattaattaacacttGCAGTGCTCATTTGTGTCCAGAGTTAATACTAtaggtgtttttttctgtgccACCTGTTCCCCCAATGCTCTATATCCCTTAACTATGACTATGTAAGGATGGCTTCTGTTCTGATGTCTGTTTTCTGTGCTTGATTCAACCCCCATGTAAACATCTCACAGCTTGTTATGGATGGACAGAGCATAGGTGTGTCAAGAATTGAAGTATGAGGGATCAGAAATAGAGAGAATGGCAAGTGGATGTAATGGCGAGATATCTGCTGATGCCAATTAGCTTTTCTGCAGTTAGTACTTGTTTGTTccgccactagagggcagtatTGGCGCATGTCTATAGTGATAGAGACACTAGCTTTTGTTAGTGTAGGGATGAATGCAGTGAAAAGTGGAGGCAAACTGCAAGGAAAGAAGCGATAATGCTTCTCTTTCTCATGTCCTTTAAACACCAAACCTTGTAGAAGAcaagtttcacactgcacaaaattaaacaaaccaaaatgtaaaaaacaaaaaacagcaacaaaaaaa

Function

GO: NA

KEGG:

id description
K06768 DSCAML1; Down syndrome cell adhesion molecule-like protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257533 lncRNA downstream 74928 69744 ~ 73158 (-) True G217401
TU258239 lncRNA upstream 10129 252132 ~ 258941 (-) True G218024
TU258289 lncRNA upstream 139745 381748 ~ 382304 (-) True G218064
TU258291 lncRNA upstream 146700 388703 ~ 411051 (-) True G218066
TU258409 lncRNA upstream 470951 712954 ~ 715590 (-) False numbl
TU258419 lncRNA upstream 489359 731362 ~ 741843 (-) True G218184
XM_034310506.1 mRNA downstream 95909 47324 ~ 52177 (-) False fkrp
XM_026943583.2 mRNA downstream 96362 47324 ~ 51724 (-) False fkrp
XM_026943582.2 mRNA downstream 96381 47324 ~ 51705 (-) False fkrp
XM_034310505.1 mRNA downstream 96381 47324 ~ 51705 (-) True fkrp
XM_026943416.2 mRNA downstream 118323 16322 ~ 29763 (-) True serpine2
XM_034310388.1 mRNA upstream 90206 332209 ~ 359609 (-) True scn4ba
XM_034310641.1 mRNA upstream 121895 363898 ~ 387663 (-) True scn2b
XM_034310333.1 mRNA upstream 153389 395392 ~ 464991 (-) False zgc:172282
XM_034310337.1 mRNA upstream 157705 399708 ~ 419285 (-) False zgc:172282
XM_034310336.1 mRNA upstream 157706 399709 ~ 464991 (-) False zgc:172282
TU258381 other upstream 412109 654112 ~ 684355 (-) False dpf1
TU258469 other upstream 636769 878772 ~ 879183 (-) True G218214
TU258537 other upstream 838285 1080288 ~ 1134018 (-) True G218265
TU258580 other upstream 912407 1154410 ~ 1154700 (-) True G218302
trnag-ucc_16 other upstream 1253759 1495762 ~ 1495833 (-) True trnag-ucc_16

Expression Profile