RNA id: XM_034310710.1


Basic Information

Item Value
RNA id XM_034310710.1
length 2773
RNA type mRNA
GC content 0.55
exon number 8
gene id gucy1a2
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 1923668 ~ 1946156 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTTTAAAGAACAagtgcactctctctctttttgtctctctctcattttctttctctctttaactctctctgattggctgcattAAACTCCGTCAGTGTCGCGCGGCGGTGCTGAGAGAGTCGACGGATCTCTCGcgctcgagagagagagagagagagagagatgaagcgGACCTGTGCGCTCGCGGATGAATGCGCGATTCGGTAAGAGCAGCGAGCACCAAGGGACGCAATCCGGTTCTCTGTGGCTCCGCGCGCTGCGCTTCTCTCCGGTTCATTTTCTCtgagggaattttttttttgtattttttttggaaatgcgTGCCATCGCGTGCCATCGTCGTCGTCCGCTCTTCGCTCCGCTCGCGCTCTCCTGCCCTGTCCTCCTCGCACGCCGTTCGCGCGCTTGACGCGGCGTCTGATGAGAGTGCTCGCGGGCCAGCGGCGAGCAGCATGTCCTCGCGCAAGATCTCGTCGGAGTCGTTCAGCTCGGTGGGGTCCGACTGCCTCGAGAGCCCCGACGACGCCGAGTGCCCGTTCTCGCGCGCCTTCTGGAACGGCCGGAGCCCCGCGGAGACGCGCGCGTGCCCGTTCGACGACCAGGCTGCCACGGGAGCAAGGAGGGCCGCCAGGAGGAAGCGCGTGAACCTGGACTCGCTCGGGGAGAGCCTGAGACGGCTCACCTCACCCACGACGCAGACGATCCAGCAGGCTCTGCAGAGAACTGTGGACTTCTACAGACAGAGAAATAACAgCAGTGATGATGGGTCAGAGCAGAAATGTGCATTAGAAAAATGTCCGTTTGTAAACTCCCAGTCCGACAACCAAACCGACATCTCAGGAATTCTGCAGTACACAGCGGCAATAGTGGGTGTGGGGTTCCCTACACTCCGGGAGCGTTTCGGTGAAGAGTTCTTCGGACTTTGTCTAGAGGAGAACGAGCGGGTTCTCCGTGCTCTGGGTGGGAACTTGCAAGACTTCTTTAATGGTTTTGATGCTTTGCTGGAGCACGCGAGGACTTCATATGGCCGCAGAGCGTCTTCGGAGTCAGCGTCCTTTCTGTGCAAGGATACAGAGGAAAATAGAGACAGTGAGGGAGGAGGAAGAACCCTACTTCTGCACTGCTTTAACCCGGACCCCACGGTGGGTGTGGCCATGCCGGGGTTGATCCGAGCTGCTGCTCGGCGCATATACCAAGCGGAAGTTGAGGTGGAGGAGGCTCCGCCCACACGTCTCCGTGCAATTAACGAGGATGGAGAAATCTCTGATCACTCTACCCCATCGTCATCCCCATCTCCGCCCACTTTCTCATCCCCCGGCTGTTTGTCGTTCCTCATTCGAGAAGTTCGGATTGCGTCGTCCTCAGCGTCACCATCGTGGTTGTCCTCACGTCAGCTGTCACGCTCACCAATGGACCTCCGGATCGGACTGAGCACATTCTGCAGAGCGTTTCCCTTTCACCTCATCATTGGCCCCAATATGGACGTTCTGCAGGTAGGGGTGGGACTAAAGAATGTCGGGGAGGGGCTTAGGAAGCCACACAGGACGCTGAGCTTCAGTGACAGCTTCCAGCTCGTCTCTCCCAGAATTCCTTGCTCTTTCCAGAACATTTTGCTTCGGCTCTCTACGCCGTTCACCATTCGTACTCGGCCCGACCCGTCCGCTCTGGAAAGCAGGGAGAAGGTCATGGAACTGAAGGGTCAGATGATCCATCTTCCCGAGTCGAACTCCATCATGTTCCTGGGCTCGCCCCGTGTCGATAGGCTGGAGGAGCTGATGGGGCGTGGCTTACATCTTTCAGACATCCCTATCCATGATGCCACCCGTGATGTCATACTGgtgggcGAGCAGGCGAAGGCTCAGGATGGCTTGAAGAAGCGCATGGACAAGCTGAAGGCCACACTAGAGCGAACGCACCGCGCGCTGGAGGAGGAGAAGCGACGCACCGTCGAGCTGCTCTACTCCATCTTCCCTGGCCATGTGGCACAGAGACTCTGGCAGGGACTTCCTGTCCAGGCCAAGAAGTTTGATGATGTCACCATGTTGTTCTCTGACATTGTGGGATTCACGGCCGTGTGCGAGCACTGTACGCCCATGCAGGTCATCAGCATGCTGAACGAGCTGTACACGCGCTTCGACTACCAGTGTGGCGTGCTTGATGTCTACAAgatcGAAACGATCGGTGATGCGTACTGTGTGGCCGCAGGGCTCcacaggaaatgtgtgtgtcacGCCAGGCCGATCGCATTAATGGCGCTGAAGATGATTGAGCTCTCAGAGGAGGTGCTCACGCCCGATGGCAAGCCCATCAAGCGGGAAATGCGGTTGCCATGGAGCAGACAGATTCTGCTGCAAGCAACTGCACTAACTGAAGAACGAGAACTGTGTTATACTGCTGCTCTAAACTCAGCAAAAaaagagatggatagagagagagagagagagagacagctcgAGACGAAcaaaggagaagagagagatacaagaaaagatgtgtgtgtgtgtcatacatacacatgtaattgtttatattgaatGAAAACCAAATGAGATGGCGTTATTATTCATGAGCTGTCATGAGGAGGCGGAGTCACTGGATGATTGACAGCTCTGGCAGTGTCACTGAGTTAATGGGGAGACATAAAATACCTGAGAATGACACACATAGTGTAATTCATCATTATAACACACAGAGGActgcgaatgtgtgtgtgtgcgtgtgtgtgtgctcatacTCCAGAAATAGAGCTCacagagagcgacagagagaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259241 lncRNA downstream 7891 1917713 ~ 1918020 (-) True G218825
TU259189 lncRNA downstream 138937 1777746 ~ 1786974 (-) True G218773
TU259184 lncRNA downstream 155459 1770215 ~ 1770452 (-) True G218768
TU259131 lncRNA downstream 243824 1624484 ~ 1682087 (-) True G218720
TU259256 lncRNA upstream 3122 1949278 ~ 1949551 (-) True G218840
TU259270 lncRNA upstream 31886 1978042 ~ 1980907 (-) True G218850
TU259397 lncRNA upstream 281339 2227495 ~ 2266728 (-) True G218950
TU259420 lncRNA upstream 334097 2280253 ~ 2280779 (-) True G218972
TU259357 lncRNA upstream 335245 2281401 ~ 2289859 (-) True scaf4b
XM_026943282.2 mRNA downstream 112830 1798680 ~ 1813081 (-) True pdgfd
XM_026943604.2 mRNA downstream 235327 1682765 ~ 1690584 (-) True fzd4
XM_034310478.1 mRNA downstream 328439 1592593 ~ 1597472 (-) True LOC113544557
XM_034310479.1 mRNA downstream 328439 1593078 ~ 1597472 (-) False LOC113544557
XM_026943401.2 mRNA downstream 338945 1581397 ~ 1586966 (-) True cldn15lb
XM_034310930.1 mRNA upstream 3825 1949981 ~ 1965960 (-) True cwf19l2
XM_026943348.2 mRNA upstream 73152 2019308 ~ 2035377 (-) True naalad2
XM_026943498.2 mRNA upstream 106633 2052789 ~ 2059593 (-) True tyr
XM_026943536.2 mRNA upstream 255346 2201502 ~ 2203363 (-) True LOC113544627
XM_026943391.2 mRNA upstream 299728 2245884 ~ 2249335 (-) True rwdd2b
trnag-ucc_18 other downstream 428500 1497340 ~ 1497411 (-) True trnag-ucc_18
trnag-ucc_17 other downstream 428805 1497036 ~ 1497106 (-) False trnag-ucc_17
trnag-ucc_16 other downstream 430078 1495762 ~ 1495833 (-) True trnag-ucc_16
TU258580 other downstream 771211 1154410 ~ 1154700 (-) True G218302
TU258537 other downstream 791893 1080288 ~ 1134018 (-) True G218265
trnag-ucc_22 other upstream 23256 1969412 ~ 1969483 (-) True trnag-ucc_22
TU260071 other upstream 670070 2616226 ~ 2629866 (-) False gal3st2
trnag-ucc_24 other upstream 732938 2679094 ~ 2679165 (-) True trnag-ucc_24
trnaw-cca_13 other upstream 737250 2683406 ~ 2683477 (-) True trnaw-cca_13
TU260166 other upstream 941751 2887907 ~ 2963350 (-) True G219642

Expression Profile