RNA id: XM_026943604.2


Basic Information

Item Value
RNA id XM_026943604.2
length 4453
RNA type mRNA
GC content 0.47
exon number 3
gene id fzd4
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 1682765 ~ 1690584 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGCCTGTCCGAGCGCTCCAGTCCGGTGAAGCTCGCGACCCGGGGGTTTCAGCGCCACGTGCATAGAGGAGACGGGATCCCGGGATGTTCTTTTCCATCACAGAGCGCAAGCCACACTCGGGATAATTCTCATCGTCGCTGGTATTAATTCTCTGCTTGTCTTggagtctttcttttttctgtttttcctggGATGGAAGAGTGCGCGCGCGGCACTATGGCTTGGAGCTCGCGCTCGGGTCTGGCGCTGCCCGCtcgcctgctgctgctgctgctgctgctgctgttgagCGGCGGGGCAGGAGTGGCGCGCGCGTTCGGTACAGGCGgcgcggaggaggaggaggagtcgGAGTCCGCGTGCGAACCGATCCGCATGTCCATGTGCCGTGACCTGGGCTACAACGTCACGCGCATGCCGAACCTGGTTGGCAACGTGCTGCAGGCGGACGCCGAGTTACAGCTGTCCACTTTCACCCCGCTCATCCAGTACGGCTGCGCCAAACAGCTgcggTTCTTCCTGTGTTCAGTCTACGCCCCAATGTGTACGGAGAAGGTTCCGGAGCTGATTGGTCCGTGTGGCAGCATGTGTCTGTCCGTTCAGAGGAAGTGTTTGCCCGTGCTGCAGGAGTTCGGCTTCTCGTGGCCTGACCTGCTGAACTGCAGCTTGTTCCCGCCCACAAATGATCACGCCCACATGTGCATGGAGGGTCCGAGTGAGGAGGACGAGGACGACGCTCGCTTTCCATCGGTGCGCACGCTGCGGCCACGCCACGGCCTTGACGCTGAGTGCATCCCTCTTGACCATGACCCTGGAGATGACCCCACTCCCCCAGACCGCTACGTGTGGTCAAAGCGCAGCGGTTCCTGCGTGCTGCAGTGTGGCTACGACTCTGGATTATACAGCCGCTCTGCCAAGACATTTGCTGATGCCTGGATGGCtctgtgggcggggctttgcTTCGTCTCCACCTCCTTCACAGTGTTGACATTCCTGCTGGACTCGGGACGGTTCTCCTACCCGGAGCGTCCCATTGCATTTCTGAGTGTGTGCTACAACGCATACAGCGCCGCCTTTCTGGTGTTGCTAGCAGCTGGACGTGAGCGCGTGTCATGTGATTCGGATGAGGCTGCTGTCCCCGTCCTGGCTCGGGATGGATTAAAGAACTCGGGCTGCGCTGTGGTCTTCTTGTTAGCTTACTTTTTCGGTATGGCAAGCTCCGTATGGTGGGTGATCCTCACACTAACGTGGTTCCTAGCAGCAGGACTTAAGTGGGGACACGAGGCCATTGAGATGCACAGCTCCTACTTCCACGTGGCAGCGTGGGCCATCCCAGCGATCAAAACCATCGTGGTGCTCGTCATGCGCCTGGTCGATGCGGATGACCTCACCGGCCTGTGCTACGTCGGCAACCAGAACCTGGAGGCGCTCACTGGTTTCGTGGTGGCACCACTGTTTACTTATTTGGCTGTTGGGACGCTGTTCATTGCCGCCGGACTTGTCTCGCTGTTTAAGATCCGGTCCAACTTGCAGAAGGACGGCGCCAAGACGGACAAGCTGGAGCGGCTTATGGTAAAGATCGGCGTCTTCTCCGTGCTCTACACCGTCCCGGCCTCCTGCGTTGTGGCGTGCTACTTCTACCGCGTCTCAAATTGGTCTGACTTCCAGCGAGCGCCGAGTGACTCGTACGCCGCTGCTGAGATGCTCAGGATCTTCATGTCCTTGCTGGTGGGCGTAACTTGTGGCATGTGGGTGTGGTCTGCCAAGACACTGCAGACCTGGAAACGTCGCTGTCTACGCCTGCTCTGCCCACAGAGCAACACGCGACGGACCCACACCAGCAAAAACGGCGGTGGTAAAGGGAATGAGACTGTGGTGTGAGGCAGTGAGGAACCGTGTGACATGGACAGAGCGACATCTGGTGGACACTTGCTGTCACTGTAGCACATCATTGTTCTCTCTCGACAAATATCaccagattgttttttttttacactggacAACATGGCGCAGTGGAAAACATGCAGTAAGATACAATAGGAAGTTGTGTCAGGACAGGAAGCTGTGACGTGGCAGGAAGTAGCAGGGCCACTTCTCCAATTTTGTGAATGCACAGTGAGCCGACTGAAGTGCCTTGTTTCTCAGACCTCCTGCTACTCTTCACGTTGTGGTAGCTTTCATCTATAATGCAGCAAAGACacctgggaaatggagtttttCCTCTTCTCAGTAAACAGCACCATTTACCTCGGATCAAGACCACAGCCATGTGTCCTCTGCGTTCGGATTCTTGCTGTATGCAAAATGGCCACTCACCATCTCTTCCGTCATTAGCACTATGTAGCAAAAAACAGATCGAGTGATGTTCAGTAGTGGTTTTGTTTCACTGCAGCTCACTCCAATGTGGATGTATCCTCAGTGCCACACTCTATTCACTACATAGTTCACAGAAAACCCCTCGAACATCATCAGTCCCTTGTGGACATGTGGAGTACATCATTTGtatgcagtgcattatgggattttgTGTGTGCACTGGATGTCCTCCATTACAGGCCCTTTTCTTGTTTCCTGGGTAGCGACATAACCAGAGCAGGGTTTTCCCTCGGCTTTCAGAGGGCTTAGGTGCTGCCTGGGCTCTGGGGCCGCGGTGCTGGTTGGGGGTTTGAAATTATTCGAAGGaaattttaagttatttaaaaaaattttatgttgtttgcgaccatttgtatttgtatttgtgaaGAAAACCTGGCAACACTTATCGTACTTATAGTCAAAAGTCTATTCATTTCACCAAGTACCATGTTGGAGATTTAATAAACGTATATATGGAgctgcatttatatttatatatatatatataaatggcaaaatatgctacaaataattttacaaaaatgaaatatgcaaattttgTAGGCAGTCAAGGCACCTTGCACAATATGACTGATGAGATGAGGTAGACGAGGACTTGCATCACTGATTTCGACTGGTTCTTACACTACACTAAAGGAACGGGGGAGAAAACTATTTCTGTCAGGGGCAGTTGTGGGAAATGCCACTCAACCCGCAAGCATTTAAGGCTGTTTGTGTTAAGgataacatctttttttttttttttttttttttttttttttttttgaagcggTCAGCACCTGTTTTACATAATAATCCAATGGAGTAGACCGCGTTTTCAAAAAATGCCCTGAGCTTCATTTGGGACGCTCTGAACTgcattttgaaacttttttttttttatatgaaaaaacaCTTTGGCCAGCGGttttcatcagaaaaaaaaaaaaacgctacgCGGTGAACAAAGCGTAACTTTGTTTAGCTACCAAGCCACGTTAGATATTAACGTTAGTCCAGTCGAGGTATCGTTATCTAACGTCATCTAACTAGCTACGCTGCCTAACGTAACTTAATTCAGTATCTACGTGAGTTAGCTAGGTTAGCAATTTCTtaagttatattatattataacattAGTTGTATCTTTTGATATGTTATCAATAGTGCGATATTGATATCGCGTGCACAAAAATccctaaaaaaaagtttataccTGATTTATTCTTTGTTGATGCTTACCATAGTGATGGCTTGCAACTTGCTTATCCGAGTTGATGGTTCCATCCTGAGGTGAAGGTACAGAGAAATGTCCAATCAGCTGTTTGATTAGCAAAGAAATGTCCAATCAGCTGTTTGATTAGCAAAGAAATGTCCAATTAGCTGTTTGATTAGCAAAGAAATGTCCAATCAGCTGTTTGATTAGCAAAGAAATGTCCAATCAGCTGTTTGATTAGCTTTGTGATGAGTTTCTGCCCCAGGCCAATCTAACAAACACTGATTGCTCATTCCTGTTGCCAGCTTACCTTCCCGTCCCAGATCATGCcacttctctgtttcttttttggtCAGCGCATAAAACTCTCACTGTTGTTTTAACTTTCATTCTGATATTTAGTCACCTAAATGCCTCATTTGGTTTAAGGTGCTCTGCAAAAATACTTAGGCCTCTATCTAAGCCTTTCTATGGTGGGGAAAACCCTGCCAGAGGTCCAGATATTAGCAACAGGGTAAAATTAGGACGGatcaaaaaacattaataaatatcttTGAAGTTCACGACTCATAAGTTAGGTGATGAGTTTAACCTGGTGACAGGGAGCTGGGAAAACTTCAGATAACTGCGTCTTATAGAAATTAATACGCATTTTCAAGTGAGTAATAGACCAAGGAAGCCTTATACTcatctttgtaaaaaaaaaaaaaaaaaaaaatcagatgcagtgtgttgatGGTGACCTGatagctgaaaaaaacaaaacaaaactgtgaaATCAGATTACTGGAAATCTGTGTGTTTCCGATTAGAAATCTATTTTTTCTAgttatgcaaatgtaaatgtaaatttaaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K02354 FZD4, fz4, CD344; frizzled 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259131 lncRNA downstream 678 1624484 ~ 1682087 (-) True G218720
TU259150 lncRNA downstream 6551 1675764 ~ 1676214 (-) True G218734
XR_004579506.1 lncRNA downstream 65827 1603411 ~ 1616938 (-) False LOC117599072
XR_004579505.1 lncRNA downstream 65827 1603411 ~ 1616938 (-) False LOC117599072
XR_004579504.1 lncRNA downstream 65827 1603411 ~ 1616938 (-) True LOC117599072
TU259184 lncRNA upstream 79631 1770215 ~ 1770452 (-) True G218768
TU259189 lncRNA upstream 87162 1777746 ~ 1786974 (-) True G218773
TU259241 lncRNA upstream 227129 1917713 ~ 1918020 (-) True G218825
TU259256 lncRNA upstream 258694 1949278 ~ 1949551 (-) True G218840
TU259270 lncRNA upstream 287458 1978042 ~ 1980907 (-) True G218850
XM_034310478.1 mRNA downstream 85293 1592593 ~ 1597472 (-) True LOC113544557
XM_034310479.1 mRNA downstream 85293 1593078 ~ 1597472 (-) False LOC113544557
XM_026943402.2 mRNA downstream 94310 1581397 ~ 1588455 (-) False cldn15lb
XM_026943403.2 mRNA downstream 94385 1581397 ~ 1588380 (-) False cldn15lb
XM_026943401.2 mRNA downstream 95799 1581397 ~ 1586966 (-) True cldn15lb
XM_026943282.2 mRNA upstream 108096 1798680 ~ 1813081 (-) True pdgfd
XM_026943576.2 mRNA upstream 233084 1923668 ~ 1946150 (-) False gucy1a2
XM_026943575.2 mRNA upstream 233084 1923668 ~ 1946150 (-) True gucy1a2
XM_034310710.1 mRNA upstream 235327 1925911 ~ 1946156 (-) False gucy1a2
XM_034310930.1 mRNA upstream 259397 1949981 ~ 1965960 (-) True cwf19l2
trnag-ucc_18 other downstream 185354 1497340 ~ 1497411 (-) True trnag-ucc_18
trnag-ucc_17 other downstream 185659 1497036 ~ 1497106 (-) False trnag-ucc_17
trnag-ucc_16 other downstream 186932 1495762 ~ 1495833 (-) True trnag-ucc_16
TU258580 other downstream 528065 1154410 ~ 1154700 (-) True G218302
TU258537 other downstream 548747 1080288 ~ 1134018 (-) True G218265
trnag-ucc_22 other upstream 278828 1969412 ~ 1969483 (-) True trnag-ucc_22
TU260071 other upstream 925642 2616226 ~ 2629866 (-) False gal3st2
trnag-ucc_24 other upstream 988510 2679094 ~ 2679165 (-) True trnag-ucc_24
trnaw-cca_13 other upstream 992822 2683406 ~ 2683477 (-) True trnaw-cca_13
TU260166 other upstream 1197323 2887907 ~ 2963350 (-) True G219642

Expression Profile