RNA id: XM_034310478.1


Basic Information

Item Value
RNA id XM_034310478.1
length 1229
RNA type mRNA
GC content 0.53
exon number 10
gene id LOC113544557
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 1592593 ~ 1597472 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATGAGGTAGgcggaagtgggcgtggtctccGCGGTAACCCGGAAGCGGACGGCGGCAGGGATCATGGCGTGGAGAGGATGTGTAGTCAGATGGGTTAAAGAGGATTTTATCAGTCAGACGAGTCGGAGAAACGGGTTTATGCTCCTGTACCAGCAGAGATGCGGCTTTCGGAAAGTGGCGAAGAGGGTGGAGCCAAAGATGGAGGTGGAGCAAGCAGAGTTGATACAGAAAAAAGGCGGGACTCCGGTGATAGAGCCGCCCACTCCATCGCAACCTGAGAGATCACTGCGCAGACTGGTCAAGCCTCTGGTGTTCACTATAGGGTTTACAGGCTGCTCGTTCGGCACGGCAGCAATCTGGCAGTACGAGAGTCTGAAATCTCGCGTTCAGAGCTACTTTGATGAGGTGCGAGCTGATTGGCTGGACAAACTGCGACCACAGAAACAAGGAGACCTACgcaaacagatcAATCAGTGGTGGAACAGTCTGAGTGAAGGACAGAGGAGTGTAAcaggcatCATAGCTGCTAATGCGCTGGTGTTTTGCTGTTGGAGAATTCCGTCTCTGCAGAGATCCATGGTGAGGTACTTCACCTCTAACCCCACCTCCAgtgcACTGTGTTGGCCCATGCTGCTGTCCACTTTCAGTCACTACTCATTCTTCCACATGGCGGCCAACATGTATGTGTTGTGGAGTTTCTCCTCCAGCGCAGTGAGCATGATGGGAAAGGAGCAGTTCATTGCTGTCTATCTGTCCGCaggtgtGATCTCCTCATTTGCTAGCTACGTGTGTAAAACGCTAACAGGGAGACTGGGGCCTTCGTTAGGGGCGtctggtGCTATTATGACCGTGCTCGCTGCCGTCTGCACGAAGATCCCTGAAGCTAAACTGGCCATCGTCTTCCTCCCTATGTACACCTTCACTGCAGGAAATGCACTGAAAGCCATCGTTGCCCTGGATACAGCAGGTTTGATTATGGGATGGCGCTTTTTTGACCACGCTGCTCATTTAGGAGGCGCTCTGTTTGGCATctggtACATCTTCTACGGTCATGAGCTGATCTGGAAGAACAGGGAGCCGCTGGTGAAAATGTGGCACAACTTCAGGACGCGAGGACCCGGCACCGGCGGCAACGGATCCCTCTAGAGcatcatgggaaaaaaatattacaccGGATCAGCATAATAAACACCGGTTTATTAGGAatgagtgtgtacagtgtgcgtgt

Function

GO: NA

KEGG:

id description
K09650 PARL, PSARL, PCP1; rhomboid-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259106 lncRNA downstream 15382 1576881 ~ 1577211 (-) True G218695
TU259076 lncRNA downstream 24402 1567520 ~ 1568191 (-) True LOC113544681
XR_004579506.1 lncRNA upstream 5939 1603411 ~ 1616938 (-) False LOC117599072
XR_004579505.1 lncRNA upstream 5939 1603411 ~ 1616938 (-) False LOC117599072
XR_004579504.1 lncRNA upstream 5939 1603411 ~ 1616938 (-) True LOC117599072
TU259131 lncRNA upstream 27012 1624484 ~ 1682087 (-) True G218720
TU259150 lncRNA upstream 78292 1675764 ~ 1676214 (-) True G218734
XM_026943402.2 mRNA downstream 4138 1581397 ~ 1588455 (-) False cldn15lb
XM_026943403.2 mRNA downstream 4213 1581397 ~ 1588380 (-) False cldn15lb
XM_026943401.2 mRNA downstream 5627 1581397 ~ 1586966 (-) True cldn15lb
XM_034310664.1 mRNA downstream 11564 1560569 ~ 1581029 (-) False atg16l1
XM_034310666.1 mRNA downstream 12079 1560569 ~ 1580514 (-) False atg16l1
XM_026943604.2 mRNA upstream 85293 1682765 ~ 1690584 (-) True fzd4
XM_026943282.2 mRNA upstream 201208 1798680 ~ 1813081 (-) True pdgfd
XM_026943576.2 mRNA upstream 326196 1923668 ~ 1946150 (-) False gucy1a2
XM_026943575.2 mRNA upstream 326196 1923668 ~ 1946150 (-) True gucy1a2
XM_034310710.1 mRNA upstream 328439 1925911 ~ 1946156 (-) False gucy1a2
trnag-ucc_18 other downstream 95182 1497340 ~ 1497411 (-) True trnag-ucc_18
trnag-ucc_17 other downstream 95487 1497036 ~ 1497106 (-) False trnag-ucc_17
trnag-ucc_16 other downstream 96760 1495762 ~ 1495833 (-) True trnag-ucc_16
TU258580 other downstream 437893 1154410 ~ 1154700 (-) True G218302
TU258537 other downstream 458575 1080288 ~ 1134018 (-) True G218265
trnag-ucc_22 other upstream 371940 1969412 ~ 1969483 (-) True trnag-ucc_22
TU260071 other upstream 1018754 2616226 ~ 2629866 (-) False gal3st2
trnag-ucc_24 other upstream 1081622 2679094 ~ 2679165 (-) True trnag-ucc_24
trnaw-cca_13 other upstream 1085934 2683406 ~ 2683477 (-) True trnaw-cca_13
TU260166 other upstream 1290435 2887907 ~ 2963350 (-) True G219642

Expression Profile