RNA id: XM_034310571.1


Basic Information

Item Value
RNA id XM_034310571.1
length 3352
RNA type mRNA
GC content 0.53
exon number 24
gene id LOC113544498
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 4392776 ~ 4460707 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAGGAAACGGGACTATTTGCGGAATATAAAAGATGAACAAACTCTGGCTCGCGTTATGCAACAGTCGCTCTCCGTAGACTGCGGTCGCGTGACGAGCGCGCCGACTTTATGGCACAGTTTAGCGCATAAATCCTCGGTGTCCGTGCATGCCCGTGCTCAGCGCGAGCCCCGCCGCTTGTTGTGTTGGGCTTCACTTCGTGTCCTGAgctccggtgtgtgtgtgcgcgtggctcagtctctgtctcttctcctcttctgcCGGTCTCCGCGAGCGTCTGCACACAGCCATGGCCGGAGACGGTACGGATCAGCGCGCGCTGCAGTACGAGCAAACTTTGATGTATGGACGCTACACACAGGACCTGGGTGTGTATGCGAAAGAAGAGGCAGCGCGTCTAAGGGAGGAGGCGGCATTCAGACGTCTGGTGACGGAGAGAAGCCGATCGCTCGAGCTCCTCGAGTATGACAAGAGCCGCTGTGCCAAGTGCAGGAtctgtaCAGTTCACTGTCAGAAGTTCCTGATCTCGCGTGTGGGAGAGGATTGGATCTTCCTCATCCTGCTCGGACTCGTCATGGCCCTCGTCAGCTTCGTCATGGACTTCTGCATCGCCATCTGCCTACAAGCCCAGAAGTGGATGTACGGAGGTTTGGACAGTAACATGGTTCTGCAGTACTTGGCGTGGATCACTTACCCTGTAGTTCTCATCAGCTTCTCCGCCGGCTTCACACACATCGTAGCACCGCAGGCTGccgGTTCTGGTATCCCTGAGATGAAGACCATCCTGAGGGGTGTGGTGTTAAAGGAGTACCTCACCCTCAAAACCTTTGTAGCCAAGGTCATTGGCCTGACGTGTGCCCTGGGTAGTGGGATGCCCCTGGGCAaggagGGTCCATTTGTGCACATAGCGAGTCTGTGTGCAGCGCTGCTTTGCAAGTTCATGTCACTCTTCGGGGGAATTTATGAGaaTGAATCGCGGAACATAGAAATGTTGGCCGCTGCGTGTGCTGTTGGTGTTGGTTGCTGCTTTGCGGCCCCCATCGGAGgtgtgctCTTCAGCATTGAGGTCACCTCCACGTTCTTCGCTGTAAGGAACTACTGGCGTGGGTTCTTCGCTGCTACCTTCAGTGCCTTCATCTTCAGAGTGCTGGCTGTGTGGAACCAAGacgaagagaccATAACTGCTCTCTTCAAGACTCGTTTCCGCCTCGACTTTCCCTTCGACCTTCAGGAACTGCCAGCGTTTGCTGTTATTGGgatagCGAGTGGTTTCGGCGGCGCTCTGTTCGTTTATCTGAACAGACTCATCGTCCAGTTCATTAGGAAGCAGAAGGTGATCAACAAGTTCCTCATGAAGAAgcGTCTTCTATATCCTGCCCTCGTCACCCTCCTGATCTCCACGTTGACCTTTCCTCCTGGATTTGGACAGTTCATGGCaggccagCTGACCCAGAAGGAGTCTCTGGTGACGTTGCTGGACAACCGCACATGGGCGAAGCAGGGCATCGCTGAGGAGTTCGAGTACGACGGTCACGCCGCTGCCTGGAAACACCCACAGGCCAATGTCTTCGTCACGCTCGTCATCTTCATCGTGATGAAGttttGGATGTCAGCTTTGGCCACCACTATCCCAGTACCCTGTGGTGCATTCATGCCCGTCTTTGTGATCGgtgctGCTTTCGGCCGGTTGGTGGGTGAGAGCATGGCTGCTTGGTTTCCTGAAGGGATTCACTCAGACGGTGTTGTGTATTCAATTGTACCAGGAGGATACGCTGTAGTGGGTGCGGCAGCCTTATCCGGAGCCGTAACACACACCGTGTCCACGGCGGTGATTGTGTTCGAGTTGACGGGACAGATCAGTCACATTCTCCCTATAATGATCGCCGTTATATTAGCCAACGCCGTGGCTCAGAGCCTCCAGCCGTCGATTTACGACTCCATCATACGCATCAAAAAGCTACCGTACCTCCCAGAGCTCGGTTGGGGACACCACGAGAAGTATAACATTCGTGTGGAGGACATCATGGTGAGGGACGTGAGGTTCATCACGCTGAACTGCACTTACAGAGACCTGCACGACGTCCTGCTCACCGAGAGACTCAAAACACTCGCGCTGGTCGAGTCCTCAGAGTCGATGATCTTATTGGGCTCAATTGAGCGTGCTCAGTTGCAGGCGCTGCTGTCCAATCAGCTCGGGCGGCCACGGAGACTCGAGTACCTCCGCCAACGCTCTGAGAACGAGAAGAAACACTCGGACACACACAGCAACGAGGACAGTGTTCACAAGGTCAACCAGGAAGTCCGCTTCCAGatcTCTACGGAGGAATCCTCATTCACTCCTCCTCGCTCCATCTCACCTAAACCACTGAAACCTGCACTGAAGAGACAATCAATGGTGGAGAGAGGCTCAAAGTCACCTACaaGTCAGGACTCGGGCATCGCCTTAAAGAGTCTCTTCTGCGCCCACCCAGACACTGAGGGGGCAGAGATCTATAACCTGGAGAACTCGCTGGCTCCTGAGCACAGGAAGCTCAAGCGTGTGAGGATATCGGTGGCGGAAGACATTGAGGACGACATGACCATGAGAGAGATCGCTGAGTGGGAGGAGCAACAGCTTGACGAGCAGGTCAACTTCAACAACTGTAAGATTGACCCCGCCCCCTTTCAGCTGGTGGAGCGCACCTCACTgcacaagACACACaccattttctctctgttggGTTTGGACCACGCTTACGTCACCAGCATCGGACGCCTCATAGGGGTCGTATCACTCCGAGAGCTGCGTAAGGCCATCGAGGGTTCGGTGACGGTGAAGGGGGTGAAGGTGCGCCCCCCGCTGGCCAGCTTCAGGGACAGCGGCACCAGCAGCAGTGACGCTGAAGTGACTGAGCTCCACAAACTGTGGAACCGCCACACCAACATGACGCTGCCGAGAGACCAGCAGCCCTCCGACTCGGACGAGAAATCccagtgaaaaaacaaaacaaaacaaagggaACAGAAAAGACAAGGGAGGATGGAGGAAAGGAGTTGAATAAGacttgtaattattttttgtctgtttttttctctgaaagcTGAAGAGCTGCACACTTCTGGGTTTCTTCTGGAAAGTTCTGTATTCGGTTCGCTGGTGGACGCTTGGAAAAGTGGATTTAAGCTCCTTATCTTTCACGTCCCTCCTCTTCTGCACTGATCTCATTTCTTGGTTTCGAAAAAGGGACGTACTAACGCTACATATTTGAACAATTTCAGACAAAACTATGTGGTTGCTTTTCTACAGCTTCTGTTCTTCTCTCGTTCTTCCTCTTGTCTTTGAtcttccagtcttttttttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260838 lncRNA downstream 540 4389272 ~ 4392236 (-) True G220267
TU260852 lncRNA downstream 67631 4281004 ~ 4325145 (-) False G220278
TU260836 lncRNA downstream 75155 4314866 ~ 4317621 (-) True G220266
TU260867 lncRNA downstream 87330 4304359 ~ 4305446 (-) True G220290
TU260851 lncRNA downstream 110316 4281004 ~ 4282460 (-) True G220278
TU260946 lncRNA upstream 103013 4563720 ~ 4564128 (-) True G220359
TU260949 lncRNA upstream 128637 4589344 ~ 4589553 (-) True G220362
TU261237 lncRNA upstream 155575 4616282 ~ 4616632 (-) True G220621
TU261315 lncRNA upstream 414937 4875644 ~ 4883440 (-) True G220690
TU261318 lncRNA upstream 427199 4887906 ~ 4888446 (-) True G220693
XM_034310535.1 mRNA downstream 55878 4320152 ~ 4336898 (-) False LOC113544495
XM_034310534.1 mRNA downstream 55878 4320152 ~ 4336898 (-) False LOC113544495
XM_026943335.2 mRNA downstream 55879 4318343 ~ 4336897 (-) False LOC113544495
XM_026943336.2 mRNA downstream 55879 4318343 ~ 4336897 (-) False LOC113544495
XM_026943334.2 mRNA downstream 55880 4317991 ~ 4336896 (-) True LOC113544495
XM_026943284.2 mRNA upstream 19840 4480547 ~ 4491680 (-) True chrd
XM_026943283.2 mRNA upstream 19840 4480547 ~ 4491677 (-) False chrd
XM_026943489.2 mRNA upstream 41074 4501781 ~ 4525814 (-) False LOC113544596
XM_034310760.1 mRNA upstream 41074 4501781 ~ 4525803 (-) False LOC113544596
XM_026943491.2 mRNA upstream 41074 4501781 ~ 4525799 (-) False LOC113544596
TU260468 other downstream 575989 3740282 ~ 3816787 (-) False LOC113544484
TU260466 other downstream 575989 3811560 ~ 3816787 (-) False LOC113544484
TU260467 other downstream 575989 3811560 ~ 3816787 (-) False LOC113544484
TU260175 other downstream 1481611 2907326 ~ 2911165 (-) True G219651
TU261666 other upstream 1249391 5710098 ~ 5710891 (-) True G220990
TU261738 other upstream 1337278 5797985 ~ 5803878 (-) False LOC113532612
TU261846 other upstream 1560513 6021220 ~ 6024311 (-) False dynll2a
trnap-cgg_8 other upstream 2734816 7195523 ~ 7195594 (-) True trnap-cgg_8
XR_004579456.1 other upstream 2931708 7392415 ~ 7463499 (-) True zgc:77784

Expression Profile