RNA id: XM_034310619.1


Basic Information

Item Value
RNA id XM_034310619.1
length 930
RNA type mRNA
GC content 0.49
exon number 6
gene id mrpl28
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6527472 ~ 6532884 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCTGGGGCTGCACAGAGAACAGATGCCGTTACACAAATACCCCCCGCACCTGTGGGAAGCCCTGAAGTTAAAGAAAGGGATCTACGCCCGTCTGCCGCAGCACTACCTGAAATCCCTGCAGGACACGTCACCCCCAACTCCGGTGCACTGGAAACCTCTGGGAGTGAAATACAGAGCAAACCCGAAAACAGGCCACAGAGAGCGGGTTCAAGATGTACCCATTCCCGTTTATTACCCACCGGAGTCACGAGACGGCCTGTGGGGTGGAGAGGGCTGGATACGTGGCTACAGATACGCCAATAACGATAAGCTCTCTGCAAGAGTGAAGAAGACATGGAAGCCTCAGCTCTTCAAGAGGGAGCTGTACAGTGAAATCCTTGACCAAAAGTTCAACATCACGGTCACAGCTCGCACGCTGGATCTTATCGATGCCGCTTATGGCTTTGACTTGTACATTCTAAAGACACCAAAGCAGGACTTAAACTCCAAGTTTGGGATGGACCTGAAACGCGCCATGCTCCTGCGGTTAGCACGCAAAGACACTGAGCTCTGCCCAGACGATCCAGCTCGAAGGGAGAAGATCTACAACAAATACAAGCAGTTTGAGATTCCTGCTGAGGAGGCGGAGTGGGTCGGCCTGAGTATAGAGGAAGCAGTCGAGAAACAGAGACTCCTCGAGCACAAGGATCCTGAGCCACTTTACAAGAGCTGTGTGGAGAACCTGGTGAAGGAACTGGCCATGCAGAAACTCACTGAACCCCAGCTTATGGAAAAGAAAGACTGATGGCTGCATCAGTGAtatgaacagaaataaaatgtatttattggggttttgttttctctgcttACTTTTGTATTGATGCCATTTAAGATATGCCAATATCCTGTAAATATCTAACTTCCaatcaaacaataaattaatcatCTGA

Function

GO:

id name namespace
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262210 lncRNA downstream 12507 6513828 ~ 6514965 (-) True G221448
TU262227 lncRNA downstream 109847 6416882 ~ 6417625 (-) True G221461
TU262213 lncRNA downstream 110664 6326091 ~ 6416808 (-) True G221450
TU261982 lncRNA downstream 322542 6203064 ~ 6204930 (-) True G221245
TU261950 lncRNA downstream 435038 6091913 ~ 6092434 (-) True G221214
TU262299 lncRNA upstream 106258 6639043 ~ 6639829 (-) False LOC113532805
TU262406 lncRNA upstream 154804 6687589 ~ 6688311 (-) True G221618
TU262435 lncRNA upstream 226625 6759410 ~ 6759618 (-) True G221638
TU262426 lncRNA upstream 227871 6760656 ~ 6761787 (-) True G221633
TU262458 lncRNA upstream 273370 6806155 ~ 6806367 (-) True G221659
XM_026924502.2 mRNA downstream 13739 6511236 ~ 6513733 (-) True mos
XM_026924174.2 mRNA downstream 38887 6447125 ~ 6488585 (-) False hip1
XM_026924173.2 mRNA downstream 38887 6447125 ~ 6488585 (-) True hip1
XM_026924175.2 mRNA downstream 49969 6447125 ~ 6477503 (-) False hip1
XM_026924636.2 mRNA downstream 133165 6386179 ~ 6394307 (-) True zgc:103681
XM_026924405.2 mRNA upstream 3263 6536048 ~ 6554451 (-) True cul5a
XM_034310614.1 mRNA upstream 3263 6536048 ~ 6554214 (-) False cul5a
XM_034310615.1 mRNA upstream 3263 6536048 ~ 6554084 (-) False cul5a
XM_026924891.2 mRNA upstream 25747 6558532 ~ 6579961 (-) True itgae.2
XM_026924070.2 mRNA upstream 51178 6583963 ~ 6605064 (-) True LOC113532622
TU261846 other downstream 503161 6021220 ~ 6024311 (-) False dynll2a
TU261738 other downstream 723594 5797985 ~ 5803878 (-) False LOC113532612
TU261666 other downstream 816581 5710098 ~ 5710891 (-) True G220990
TU260466 other downstream 2710685 3811560 ~ 3816787 (-) False LOC113544484
trnap-cgg_8 other upstream 662738 7195523 ~ 7195594 (-) True trnap-cgg_8
XR_004579456.1 other upstream 859630 7392415 ~ 7463499 (-) True zgc:77784
TU263800 other upstream 2408233 8941018 ~ 8946899 (-) True G222809
TU264952 other upstream 3775275 10308060 ~ 10312487 (-) False LOC113533081
XR_004579509.1 other upstream 6408125 12940910 ~ 13007559 (-) True nf1a

Expression Profile