RNA id: XM_034310841.1


Basic Information

Item Value
RNA id XM_034310841.1
length 4139
RNA type mRNA
GC content 0.46
exon number 6
gene id mnta
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 11319275 ~ 11336278 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCGGTGTGGTCACTGATCAGGCTCTCACAGCCCGCCATCTTGTTGCGGCTCTACTACGTGTGTGGAAGAGTTCCTTCAAGAGGCGGGGGATCAAGTTgcagcttctttttttccccccccttCCTTTTAATTGGAGAACCAGAGAGCCGAACGAAAGATTGTTTTTAATTGCTCCAAAGCAGGGACTGCtcagctgtttgtttttattttacggAACTTAAAGAATACAACAGAGATGAGTATCGAGACGCTTTTGGAAGCAGCCAAGTTTTTAGAACTGCAAGCCCAGCAACAACAGAAAACACGTGAAGAGAACGAGCTTCGGGAGAGACTCCGCCTCGAACAGGAAGCAGGGAAGCAAAGAGCGGAAGCACCCTCCTGCATTCAAGCCACACATGATAATCACCTGTCATCAAGGGAGGAGTCGAGTCCAGAGCGTAACCACGCCCCTCCATCAGCCCtgtccctcctcctcctcctcctcctcctcccctttCTGCTCCCTCCATTCCCATCACAGTTATTCCCATTCCTGTGGTGTCGTCCAACCCAATCCCATCACCTTCATCTCCTCACCTCAGTGTGCCCCAAAAAGATACCCACTCACCCCCATCTCAGCATGTACTGCCCCAACGTGCAGCCCTACCCCCTCAGACGAATGGCCCAAAACTGCCCCAGCCCCTGCAGCCCTACCCTAGCTCCATCGTTCGAGCTTCCCAGCATGCTCTGCTCCCCCAGCCAGCAAACACACCAGCACAGCCAAGCCTCATGGCCAAAACCAGCCCTCCTGATGATCACCGCGGCCTGGATGGCAAGAAAAGACCTGGAGGGGCAGGAACAAGGGAAGTACATAACAAGCTTGAAAAAaaacagacgTGCACACTTAAAGGAATGTTTCGAAACCCTGAAGAAGAACATCCCTCATGTTGATGAAAAGAAAACCTCCAATCTGAGTGTGCTGAGAAGTGCGCTAAGATACATTCAGACTCTGAAGCGGAAAGAGAAGGAGTATGAGCATGAGATGGAGCGCCTGGCCCGTGAGAAGATCTCCACCCAGCAGAGGCTGGCTGAGCTGAAGAACGAGCTCAGCCAGTGGATGGACATGATGGAGGTTGAGCGGCTGCTGCGGCAGACCGTCCAGCCCGAAGACGATCAAGCATCCACCTCCACGGCTTCAGAAGGTGAAGATAACATGGACGAGGACATTGACGAAGAGGGCGTGCTGACCTCGCCTCGCTCCTTACCCAGAGTGCCTCAGCCAGAGCTCAGGAAGCCATCTCCATCTCTGCCCCAAACGCTTTCTGTCCCATCCAAACCCTCCCAACCTCTACCAACTGCTACTGTATCCTCCGCCTCTGCCTTTGCCTCCGCCCAGCCTTCCTCGCCCTCGCTCTCCTTGCCCCCGGCAGCAGTGACCCAGCAGCCCCAGGCCATGGTGGCTCCTCAGAGCCTGGCATATGGGCATATTGTAGCTGCTCCCAGCATCCAGCCAACAGTAATCACACATGCTTCTTCACACGCCTCTGTCATCCAGGCTGTCAATCACGTCACCCAGACGGGCACCAAGCACATAGCCCACATCGCCCCCTCTTCCACTTCTTCCCCGTCCTCTTCCACCAGCGCCATACAGCTGGCACCTGGACCTCAGACCATCGGGCACATCACGGTGCACCCGGTGACGCACCTTCCCACACTATACCCACAACCAGTCACCatctcacacaccctctcacatgGCCAGGCCAACGGCGCCCCAGCGTTGGCCAAACAGACACCCGTTGGGCATCAGGTGCTCGCACATCACCCGCAGCTGGTGGGCCAGACTGTCCTCAACCCAGTTACCATGGTGACCATGCCCTCCTTCCCTGTCAGCACACTGAAGCTGGCATGAGAGAACAGGCTGACGTGGGTTCTGTATTTACTGGCACAAGCCCCTGCTAGTCACATCCAGCATTACAGCAGACAAAAGCAGTacattccaaataaaaaaaaaatctatgaagaGTCTAAGACAAATCTATCTAAATTTATATATAGCTATGTTATGTTGTatggtaaaagaaaaaaaaaagtttttgtatcCTTTTGTGTGGATAAAATTAGATTGTGATGTCCTCTTTCATGCTGCTATGtacgtgtgtgcatgtgtgcgtgtgtgtgagtgtgagcgtgTGAGAGAGATCGTGAACAGAAAGGTGGATGATTGggcaaaaatatatcacaataacTCGAGACATTTTCACAATGCATCATTTTTAGcatcatatttacatttgctcACAAAGTGCCAGGAAATTCAGTGCTACAGTTAAAAAACTGTACAAACTCTGATTATATTTGGATCCAAAAGTAAATTATCACAGAACTAAAGGGAAAATTAACCATTTAGTACAAATATATAGTTTAATTTACAATCAGTTATTTGTTAAGGGGAGTAATAATAAGATTGGTCATTGTCATAAAAGAAGTATTGTTATATCACCCAGCCCCTGGAGCATAAGTTTGGAGTGGTGTCGTAATCTTGACGATTTCGACAGGCTACTGTGTCATGCGTCTCATGGTATAGATTGCGCAACTGTAGTGTTTTGTGGTTTAGCACAAAACCTTAGTGTACCTCACTCTCATCAGCTGATAGAACACAGTTCTTATAAACCATGGTTTGAAATGTATGTATCAGTTTTTTAACTGCCCTTTTATATGGCATTTATTCAAAGTTTTTAGTCCACCCTTATCAAAAAGTATCTTTGCAGGTGTTCAGCATGCAATTTTCTTGAATGTTTTCTTGAATCTTTCCTATCTAGCATTCAGGGTGTTGCACTATTGCTTTTCGATTGTATGTTGTGCGTTTTGGACAGAGAGACTCGAGGGAAATCTTCTCCTGTGCCTTTAACCCTGCCTCTGTGGCACTGCGGTTCTCTTCAGTGCTGCACAGACGTCCTCTGGTGTCCTCTCTCTGTAACTGCACTCTCAGCTAACACACCAGCCATTAGCTGCAGAACTTCGATTCTGCTTGAGTGCTCAGTCTAGCCAGCAAAACACGAGGTCACAGTTCTATAGCCATCACTGTGCCATGGAGGGGTTACAATATAGTAAAAGAATTAAATATGAGATCCTGAACTTTATCGTGAATGTACTTTTTCTGTGTTCAGATGGAACACATTCAATGCCTTCATCATGTTGTAGCTGATAAATGTGAGCTTTATGTTTGGCAGGAGTGTGTATTCATTGTAACgagggagggtgtgtgtgtgtgtgtgcgcgcgtgcttGTGATAAGAGTGTATGGCATATTCTACTTTGTCAACTTCCATCTGTTTAGTGCTGATTAATTTGACTGTATGTGTTTGATAGTGTGTTTGTGACTAATAGTACATGGTGGAAATGCAAAGAcgatatacagtacatcatcCAAAGcttctgtgaaaatatcaggctgCAACAAGAATGTGATCCTGTAGGAGTGTAAATTCAGAAAGACAGGTGTGTATAAGCCCATCACTAAACTACTCAAAGGTGGTGGATATTTATAATACTTCACAGACAACTGTGTCTTTACtgaaccacactgaacactccacAGACCTGCAAGTCCAATCTAGCCTGAGTGTCCTCTGAGATTTGACTCACAAACCTCTAACACTGTGATATTGCTCATGTGACCCACAATAGAACAGCCCAAGTTTACGATATCGATATTACCAAGCACTCACGTAACCTAGCAGAGTCCCTTCATTCATTTCTATGTTTCATGAATGAGAGTTTTAACTTCATCTTTACTGAAATCTGGTTGAAGTTTGGGTTCACACACACTAGGATGCACATGTTCACCAGTTATAACACCTCTTCTGGTTCAACGTGTTTGATTTGGCGTGTACATGAATGACTTGTTGGGGAAAACTGTTTTAGGGgaccatatacagtactgtatactaTGGGGCAACCTTTCTGACCTCTGTccacattaaatattatatatacaaaaagtgtgtttttcccTATGGAGAAAgtttatgttgtgtatataGCCTGTACATTTGGGGCTGCACAGATCTAACTGTCCATCATGTTCAAGTTCTAAATGAAGAGGAAGAGCATAACTAGAacaaatgttgaataaataaaatcttgttACATTTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265559 lncRNA downstream 98619 11208397 ~ 11220656 (-) False aipl1
TU265556 lncRNA downstream 150607 11105571 ~ 11168668 (-) True G224287
TU265558 lncRNA downstream 150607 11163879 ~ 11168668 (-) False G224287
TU265557 lncRNA downstream 171517 11105571 ~ 11147758 (-) False G224287
TU265332 lncRNA downstream 249317 11069684 ~ 11069958 (-) True G224086
TU265646 lncRNA upstream 58442 11394720 ~ 11397828 (-) True G224358
TU265648 lncRNA upstream 87283 11423561 ~ 11423868 (-) True G224360
TU265649 lncRNA upstream 88351 11424629 ~ 11424859 (-) True G224361
TU265658 lncRNA upstream 127970 11464248 ~ 11464691 (-) True G224370
TU265659 lncRNA upstream 129675 11465953 ~ 11466243 (-) True G224371
XM_026924605.2 mRNA downstream 10764 11287605 ~ 11308511 (-) True vps53
XM_034310378.1 mRNA downstream 34652 11281331 ~ 11284623 (-) False rflnb
XM_034310377.1 mRNA downstream 34653 11281331 ~ 11284622 (-) True rflnb
XM_026924944.2 mRNA downstream 39301 11273763 ~ 11279974 (-) True exo5
XM_026924962.2 mRNA downstream 75283 11235640 ~ 11243992 (-) True abhd15a
XM_026923959.2 mRNA upstream 2205 11338483 ~ 11372787 (-) True mettl16
XM_026924338.2 mRNA upstream 38425 11374703 ~ 11402484 (-) True pafah1b1a
XM_026924340.2 mRNA upstream 38425 11374703 ~ 11401687 (-) False pafah1b1a
XM_026924196.2 mRNA upstream 66968 11403246 ~ 11422786 (-) False cluha
XM_026924195.2 mRNA upstream 66968 11403246 ~ 11422786 (-) True cluha
TU264952 other downstream 1006788 10308060 ~ 10312487 (-) False LOC113533081
TU263800 other downstream 2372376 8941018 ~ 8946899 (-) True G222809
XR_004579456.1 other downstream 3855776 7392415 ~ 7463499 (-) True zgc:77784
trnap-cgg_8 other downstream 4123681 7195523 ~ 7195594 (-) True trnap-cgg_8
TU261846 other downstream 5294964 6021220 ~ 6024311 (-) False dynll2a
XR_004579509.1 other upstream 1604632 12940910 ~ 13007559 (-) True nf1a
XR_004579489.1 other upstream 1733858 13070136 ~ 13080860 (-) True wsb1
TU267049 other upstream 2031485 13367763 ~ 13368850 (-) True G225622
TU268481 other upstream 4476111 15812389 ~ 15844783 (-) True G226830
TU268676 other upstream 4783019 16119297 ~ 16165036 (-) False G226991

Expression Profile