RNA id: XM_034310854.1


Basic Information

Item Value
RNA id XM_034310854.1
length 1083
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC117599093
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 1119792 ~ 1121387 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGAGCTGTGTTCCAGGAAGTAAAATGTACCGCTTGCAGCAATATCTTTTAAAGCAGCAAAGACAGGTGACCACAGCCCCTTCTGCTACACCTTCACCCTCACCATCAACTCCCTCTGCACCTTCCACTTCATGCCTTTCCTCTGATCATCCAGtaatggaggaggatgaggaactGGAGAAGATGATGCTGAGTCTGTCTCCACCCAAATGTCCTACACAGCAGAGGTCACCCACAGCCACTGCGTGTCCAGTCTTCTCTGCAGCAGGAGGTTATTTTCCACATCAGTTTTGGAGGCTTATCCTATTACCCACAGTTTTTTCCTCCATAactgtttttaatacatttgtttattgttttggcAGTGTTCTTGCCTGTTCTAAAAATTGCGTTCTTTTGTTCTACTAACTAATGTTAAAGGTTGAACATACTGGTGATGAGGTTCTGCCACAGCCACCATCAAGACCACATGCGGTCTGCCATCCTCACACACCACCACCTCCTGTGCCTAGCACTTCCTCTCAGTGCAAATCCCCTGCATCACTGCCCCGAGTACCACcaccagctgtgcagtcagtACCCGCAGCACCTCTACCAGCTGCTCAGTCAGTACCTGCACCAGTGccctccacacagacaggagtcCCTGTGTCCAGTGACATGCAAGATATTAGCCGCTGGAACTGCTCCTGCCATCAAAAAATCTGGATGAAAACAGAGATGGAAGCCCTGGGGCTCTGGCCAGGATCACGACCGGTGAGACAGCCTATGAACATGGTTTCCTTGTGGCGTTATCCTCCTCAGCCTGAGCTTGTAGAAACCAACACAGGCCTGCCATCACCAAAATACTTTCAGCTCCATCCCTTCTTTATCTGGAAACCGGAGCACAGTATAATGCAAAGGCTAAGAAACAACTACATCCTGCCTTGTCTCTACAGCTGTCCAAACCCTCAGGTTGTTTCCTCTGGTGTGGGAAGGCCCAGAGTGATTCTTGGTACCAGCGGGCAATATTACATCCTTTCCTCTCGACTGAGCTGTAAAGCATGTAAAAATACTGGTTCGCTGATAAACCCCAGTGGCTAG

Function

GO:

id name namespace
GO:0007632 visual behavior biological_process
GO:0007634 optokinetic behavior biological_process

KEGG:

id description
ko05165 Human papillomavirus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258540 lncRNA downstream 26613 1092791 ~ 1093179 (-) True G218268
TU258486 lncRNA downstream 110290 955511 ~ 1009502 (-) False mecom
TU258434 lncRNA downstream 256347 791773 ~ 863445 (-) True G218191
TU258460 lncRNA downstream 272152 847396 ~ 847640 (-) True G218208
TU258428 lncRNA downstream 379794 734370 ~ 739998 (-) True G218188
XR_004579531.1 lncRNA upstream 2042 1123429 ~ 1127973 (-) True LOC117599090
TU258584 lncRNA upstream 39326 1160713 ~ 1161109 (-) True G218306
TU258603 lncRNA upstream 96844 1218231 ~ 1227815 (-) True G218324
TU258604 lncRNA upstream 99766 1221153 ~ 1222614 (-) True G218325
TU258627 lncRNA upstream 206751 1328138 ~ 1357336 (-) True G218347
XM_034310853.1 mRNA downstream 117 1117354 ~ 1119675 (-) True LOC113533231
XM_034310746.1 mRNA downstream 16908 955480 ~ 1102884 (-) False mecom
XM_034310745.1 mRNA downstream 16909 955480 ~ 1102883 (-) False mecom
XM_034310747.1 mRNA downstream 16909 955480 ~ 1102883 (-) False mecom
XM_034310744.1 mRNA downstream 16909 955480 ~ 1102883 (-) True mecom
XM_026943414.2 mRNA upstream 76726 1198113 ~ 1217196 (-) True irs1
XM_034310856.1 mRNA upstream 113520 1234907 ~ 1290435 (-) True col4a4
XM_026943589.2 mRNA upstream 271890 1393277 ~ 1447217 (-) False slc8a2b
XM_026943588.2 mRNA upstream 271890 1393277 ~ 1447217 (-) True slc8a2b
XM_034310354.1 mRNA upstream 348433 1469820 ~ 1474274 (-) True gmnc
TU258469 other downstream 240609 878772 ~ 879183 (-) True G218214
TU258381 other downstream 435437 654112 ~ 684355 (-) False dpf1
trnae-cuc_27 other downstream 887981 231740 ~ 231811 (-) True trnae-cuc_27
TU258580 other upstream 33023 1154410 ~ 1154700 (-) True G218302
trnag-ucc_16 other upstream 374375 1495762 ~ 1495833 (-) True trnag-ucc_16
trnag-ucc_17 other upstream 375649 1497036 ~ 1497106 (-) False trnag-ucc_17
trnag-ucc_18 other upstream 375953 1497340 ~ 1497411 (-) True trnag-ucc_18
trnag-ucc_22 other upstream 848025 1969412 ~ 1969483 (-) True trnag-ucc_22

Expression Profile