RNA id: XM_034310906.1


Basic Information

Item Value
RNA id XM_034310906.1
length 1551
RNA type mRNA
GC content 0.51
exon number 6
gene id mffa
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 863690 ~ 876945 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCGGGTTTTCCGCCGGTTGTGTGGAGACGCCTCTCGGTAATGGAGCTCGCTGTTTGAGCCTCAGTCTGAGTTTATACTTTAATTTCTGGTTTCTGAGATGAATCCGGCGTTAGAGAAgATGAACGGAGCGGCGTTCCCGTCTCCCACAGCCGAAATGGCCGAGATGAACCGCATCCACTACGAGCTCCAGTACACGGAGGGCATCAGCCAGCGCATGCGCGTGCCCGAGATGCTGAAGGTCGCGCCGTACACCGGCGAGGAGAAAGACGGCAGCGCCGCCAATCCGGGCCACGATCCGGTTCTGCACACGGCCATGATGCAGGTCCCCGACAGGATCATCGTCACAGGAGATCATGAAGACACGCAGTTCTCCAGACCCAGAGATCTGGATCTTATCCAGTCCACGCCGCTGGAGACTCTGTCTCTGAAGACTCCTCCTCGGGTTCTCACCCTCAACGAACGCCCCCTCGACTTCCTGGAGATGGAGCAGCCCAGCGAAGAGGTACGCACTCAGAGCAGAGCACGCAGAGAACGTTCAGTCAGCGAAAACGCAGCTGTGCGTCACAACGGCCAGGTCCCCAGAAACGACTCCTCATTCGCGCTGGCCACACTGGACACGTCTATGGAAGGTGGAGAAGACCTGGCCGTGGCAGACGCTACAGCTTTAAGGAGACAGATCATTAAGCTGAACCGGCGGCTGCAGCTCTTAGAGGAAGAGAACAAAGAGCGAGCCAAGCGCGAGATGATCATGTACTCCATCACCGTGGCGTTCTGGCTCATCAACAGCTGGGTGTGGCTCCGGCGCTGAATCAGCAGCGACCCTGTTTCGCCTAAGCTCCGCCTCCTCGCTTCAAGTGTCGAACGTCAGCCCTGATTTATGCACTCGGGTCCCAAAGCTCGCGAGCCTCTCCTCACTGCCTGCACAGGGAGACTCCATCAGCTGAAACACACCTGTCCTCTTCCTGTACACCTGTGATTCGTTTTGTAAACATTGACATCATTGTTCTTAAAGACCATGCATGATCCAGGtgtataataacataatataatataatatattctcATGCTTTTGCTTCACTCTTAGACAAGATTCAGCGCTGTGTTTGTATTCAGCCTGTTCTCGGACCGTGATATTCCTGTCTGTATTCCCACAAGCACAACTCCACGGATAAAGACGACCCGATTCTGTCTGAAATGATGCATCTGGTAAATATGGACCCAAGAAAACGGGACACACTCGTCTAAATATCTTGCGACTAGTCGGACTGATAGTATTTAAGGAATGTCGTGATGATTTTTGTGAAGCTGTTGCGACGTCTTGAAATGTTCTGTAACGTCCTGTTCCGTCTTTCCTGTGATGGATGTGATGATCGTGTTTGGAATTTTGAGACCATGTTTGGAATGGGATGACcataattatgtattataacttctctttctctctctctctctctctctctctctctctctctctctctctctctctctctctctcttgtccgTATGCACTATGATGTAACTACAGAATAAAGAGCAATGGTACCTCCATA

Function

GO:

id name namespace
GO:0090314 positive regulation of protein targeting to membrane biological_process
GO:0090141 positive regulation of mitochondrial fission biological_process
GO:0005777 peroxisome cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0042803 protein homodimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258434 lncRNA downstream 245 791773 ~ 863445 (-) True G218191
TU258460 lncRNA downstream 16050 847396 ~ 847640 (-) True G218208
TU258428 lncRNA downstream 123692 734370 ~ 739998 (-) True G218188
TU258426 lncRNA downstream 125472 733617 ~ 738218 (-) True G218187
TU258423 lncRNA downstream 126797 731516 ~ 736893 (-) True G218185
TU258486 lncRNA upstream 78566 955511 ~ 1009502 (-) False mecom
TU258540 lncRNA upstream 215846 1092791 ~ 1093179 (-) True G218268
XR_004579531.1 lncRNA upstream 246484 1123429 ~ 1127973 (-) True LOC117599090
TU258584 lncRNA upstream 283768 1160713 ~ 1161109 (-) True G218306
TU258603 lncRNA upstream 341286 1218231 ~ 1227815 (-) True G218324
XM_026943423.2 mRNA downstream 2095 857338 ~ 861595 (-) True mrpl44
XM_034310804.1 mRNA downstream 9864 823729 ~ 853826 (-) True agfg1a
XM_026943578.2 mRNA downstream 45028 810898 ~ 818662 (-) False si:dkey-260j18.2
XM_026943579.2 mRNA downstream 45028 810898 ~ 818662 (-) True si:dkey-260j18.2
XM_026943580.2 mRNA downstream 55764 794925 ~ 807926 (-) True slc5a2
XM_034310746.1 mRNA upstream 78535 955480 ~ 1102884 (-) False mecom
XM_034310745.1 mRNA upstream 78535 955480 ~ 1102883 (-) False mecom
XM_034310747.1 mRNA upstream 78535 955480 ~ 1102883 (-) False mecom
XM_034310744.1 mRNA upstream 78535 955480 ~ 1102883 (-) True mecom
XM_034310751.1 mRNA upstream 78535 955480 ~ 1102882 (-) False mecom
TU258381 other downstream 179335 654112 ~ 684355 (-) False dpf1
trnae-cuc_27 other downstream 631879 231740 ~ 231811 (-) True trnae-cuc_27
TU258469 other upstream 1827 878772 ~ 879183 (-) True G218214
TU258537 other upstream 203343 1080288 ~ 1134018 (-) True G218265
TU258580 other upstream 277465 1154410 ~ 1154700 (-) True G218302
trnag-ucc_16 other upstream 618817 1495762 ~ 1495833 (-) True trnag-ucc_16
trnag-ucc_17 other upstream 620091 1497036 ~ 1497106 (-) False trnag-ucc_17

Expression Profile