RNA id: XM_034310935.1


Basic Information

Item Value
RNA id XM_034310935.1
length 966
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC113539361
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 17328119 ~ 17337894 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAGTCAATATATTTGTAGAGCAGTGGCAGTCTGTCACTTACGAGACACAGAATAGGTTTCTACATCCAACAACCaaaatCAGTTTAAGTTGCAGCATGGATCCACAGTCAAAAATACTGCTCTGCTGGATTTGCCTTCAAGTGATCTTTGCCTCTGCTTTTTCGGATGTGTGGAAGGCAGAAGTTGTCTCTCCAGTGGAGGCGCTGGTGTCATCTTGTGTCGTGTTGCCCTGTAAGTTTAATTACCCTGGCCTTCAACGTCCTGACTCTCGGCTGAAGGGAATCTGGCACAAAGATCCAAACAAAAATGAGCGTATCTATGATGAAGATCCTTTCTTTATTGAGGATAACTTCAAGGGGCGCACAAAGCTAATTGGCCGACTGAGTGAGAAAAACTGCTTGTTGGAGATAGACGAAGTGAGAGACCACGACGACGGCCCATTCTGTTTCAGAGTTGAAATCACAAATATAGAGAAATTCTCTTTTGTGGAGAAGTGTGTGACCATCAATATGAAGCCCGAACCTGACAAACCAAATCTGGATCATGAAGAATCCTTCACAGAGGAAACACTTGCCATCTTTAAGTGTTACGTCAGACACACCTGTCCCACACACCACCCAACTATTGAATGGAATCGTCAAGATGTTAAACCTCGTTTGTCCTATAAGGACAATGGCTTTGGAGTTTGGGAGGTGGAGTCCCTCCTGATCGTCCCTGCCACAGAGAAGGACAATCACACTGACATCACCTGCACTGTCACATTCCACGGCAACAAGAAATCTGCAGTCACTCACaagatagagatagatataTTGGCTAAGCAAATAATTAAGCAGGGTATGGAGTCATCTCTCCAGAGTGTCACACAGGAGGAAGGAAGTATGATTGATGATTGGAGGAAGCATCATTTTGACTATTAAGAAGCACCATTTTGTCCAGCTGAGCAATGAAAAGAGACATGATGC

Function

GO:

id name namespace
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269426 lncRNA downstream 20395 17286343 ~ 17307724 (-) True G227640
XR_004579543.1 lncRNA downstream 22757 17302063 ~ 17305362 (-) True LOC117599113
TU269401 lncRNA downstream 88191 17239127 ~ 17239928 (-) False LOC113539242
TU269369 lncRNA downstream 164534 17161511 ~ 17163585 (-) True G227589
TU269180 lncRNA downstream 414959 16912959 ~ 16913160 (-) True G227440
TU269561 lncRNA upstream 68054 17405948 ~ 17407225 (-) True G227755
TU269582 lncRNA upstream 96161 17434055 ~ 17438586 (-) False psenen
TU269583 lncRNA upstream 96161 17434055 ~ 17438586 (-) True psenen
TU269607 lncRNA upstream 148737 17486631 ~ 17489432 (-) False G227786
TU269609 lncRNA upstream 148737 17486631 ~ 17489432 (-) True G227786
XM_026934640.2 mRNA downstream 1320 17317354 ~ 17326799 (-) False LOC113539084
XM_034310932.1 mRNA downstream 1320 17320624 ~ 17326799 (-) True LOC113539084
XM_034310936.1 mRNA downstream 28506 17299219 ~ 17299613 (-) True LOC117599112
XM_026935075.2 mRNA downstream 45806 17275928 ~ 17282313 (-) True LOC113539358
XM_034310934.1 mRNA downstream 45806 17277722 ~ 17282313 (-) False LOC113539358
XM_026934910.2 mRNA upstream 76130 17414024 ~ 17420461 (-) False lin37
XM_026934911.2 mRNA upstream 76130 17414024 ~ 17420451 (-) False lin37
XM_026934912.2 mRNA upstream 76130 17414024 ~ 17420232 (-) True lin37
XM_026934913.2 mRNA upstream 91858 17429752 ~ 17432316 (-) True hspb6
XM_026934584.2 mRNA upstream 97023 17434917 ~ 17438614 (-) False psenen
TU268927 other downstream 963815 16363381 ~ 16364304 (-) False si:dkey-118k5.3
TU268923 other downstream 1010774 16316651 ~ 16317345 (-) True G227205
TU268676 other downstream 1163083 16119297 ~ 16165036 (-) False G226991
TU268481 other downstream 1483336 15812389 ~ 15844783 (-) True G226830
TU267049 other downstream 3959269 13367763 ~ 13368850 (-) True G225622
XR_003403925.1 other upstream 1876865 19214759 ~ 19214923 (-) True LOC113539409
TU270720 other upstream 2370421 19708315 ~ 19708841 (-) True G228758
trnae-cuc_28 other upstream 4013349 21351243 ~ 21351314 (-) True trnae-cuc_28
XR_004579494.1 other upstream 4413241 21751135 ~ 21811084 (-) True gdpd5b
XR_004579495.1 other upstream 4413241 21751135 ~ 21811083 (-) False gdpd5b

Expression Profile