RNA id: XR_003403374.2


Basic Information

Item Value
RNA id XR_003403374.2
length 1397
lncRNA type inter_gene
GC content 0.46
exon number 5
gene id LOC113532936
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 11614599 ~ 11644172 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGATTGAAAGAGCCGATTCGTTCACGaaccagagatttttttttttattatatttgtagcAAGTACTGATGCATTCCAATAAtagaaagcaaacacacaaagcatAACAAAAAGGTGCAGAAAAATTCACGAACCACAAATTTTACCCGACACATCACGACTCCTCAGTAGAGCTGTTCGAGTCCCAATGCCTGAGATCAGAGAATCGATTCTTTTAGGGATTGACTCggagtagtgaaaaaaacagATATAGGTGTTGCCTCCCCCCGCGTACCTACACTCTCTGATCACAGGTCTGTGAAGTGGAGTGACAGTGTGGAGCAGTGGCAGTGATCAGGAGTGGAGTTCTTCCTGCAGGGCTATTTGGACAGGAGGAGCCTCCGCTGGCCTTCAGAGCTGGAAAGTATGTGTACTGTGGCCACTGGCCCACCTCCCAGCCTGGGAACGGAAGCCGGGAGTCGCCAGGGAAAACAACTAGACAATCagTGCCCTGGGCTTTGCAACGGATAGCTTCCCCCACCCTCATGCTCCAAGCGGCCACCCCCACCCCCAGCGCTGAACCCTGGCCAGCCCCAGCTGCCTGGCCAGATGTGGGAGAAAGGGAGAGGCAGCGTCCTACAGGGGCCAAGGGCCTGAAAACAGAGACAGGCTGCAGAGAAAGGGAagAAAGTGGAGAGAAGCAGAACAGAAGATgtggtgagagaatgagagagaggaggagagagactgacagtgagagagagaacatctGTGCTCTTTGCAGCAGACTGTGTTCCCCAGCTTATTATAAGATGTGCTGTTTTCCTTCAGACGGACTTGGTCCCCTTACCCAAATTCTCAGATAATGAGCACATGTAGCGATGTCCACCAGATTCCGCTTTAGAGCTGGAACCAGTTTTGAATTAGTAAAACACGCAGCAAAGGAGTTCCACAAGCTAACACTGGAGCACACTAGTacaagttatcactcaaaagTATGCCTGAAAAGCAGTCTTTTTCTCACCAATAAAATTGGAGTTGAGCCAATCAgcatgtgaatctggaatgatttgcgcaggtgttttgaactctccactATTAACTCACATTGCCTGGGAGCCCATCCCCTTCCCCCTGGCTCACATGCTCTCAACTGAACTAGCGCATGTGGCCTTGCAAGGTAAATGGCTTAGCTACCATTGACTTTAACATTAACTGCTAACTTTACATAGGCCTATAataaagtgtcaaatctaacactttccaaataatgttaatggtgatgtTCATTAGaaagtaattaaatatgcatttttttaaccaGCACAGCTGCAGATGCAAGCAGTGAAAATTTCCCCCATGTGGACATTAGAGAATCGATTTGCAAATGGATTGTTTCAAAAATGtagttatgtttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265663 lncRNA downstream 152657 11472056 ~ 11473209 (-) True G224375
TU265662 lncRNA downstream 156504 11469092 ~ 11469362 (-) True G224374
TU265659 lncRNA downstream 159623 11465953 ~ 11466243 (-) True G224371
TU265658 lncRNA downstream 161175 11464248 ~ 11464691 (-) True G224370
TU265649 lncRNA downstream 201007 11424629 ~ 11424859 (-) True G224361
TU265920 lncRNA upstream 195576 11839748 ~ 11841037 (-) True G224613
TU265922 lncRNA upstream 208844 11853016 ~ 11853582 (-) True G224615
TU265943 lncRNA upstream 257109 11901281 ~ 11901522 (-) True G224636
TU266007 lncRNA upstream 329210 11973382 ~ 11973834 (-) True G224700
TU266008 lncRNA upstream 329747 11973919 ~ 11976018 (-) True G224701
XM_026924821.2 mRNA downstream 48370 11549637 ~ 11577496 (-) True taok1a
XM_026924774.2 mRNA downstream 79225 11536635 ~ 11546641 (-) False tp53i13
XM_034310848.1 mRNA downstream 79225 11536635 ~ 11546641 (-) False tp53i13
XM_034310847.1 mRNA downstream 79225 11536635 ~ 11546641 (-) True tp53i13
XM_026924696.2 mRNA downstream 91905 11528057 ~ 11533961 (-) True mmp20b
XM_026924969.2 mRNA upstream 82351 11726523 ~ 11817784 (-) True dph1
XM_026924616.2 mRNA upstream 364263 12008435 ~ 12041025 (-) True rpa1
XM_026924071.2 mRNA upstream 399828 12044000 ~ 12049331 (-) True serpinf2b
XM_026924205.2 mRNA upstream 405730 12049902 ~ 12065211 (-) True wdr81
XM_026924226.2 mRNA upstream 455138 12099310 ~ 12108019 (-) True slc47a4
TU264952 other downstream 1313379 10308060 ~ 10312487 (-) False LOC113533081
TU263800 other downstream 2678967 8941018 ~ 8946899 (-) True G222809
XR_004579456.1 other downstream 4162367 7392415 ~ 7463499 (-) True zgc:77784
trnap-cgg_8 other downstream 4430272 7195523 ~ 7195594 (-) True trnap-cgg_8
TU261846 other downstream 5601555 6021220 ~ 6024311 (-) False dynll2a
XR_004579509.1 other upstream 1296738 12940910 ~ 13007559 (-) True nf1a
XR_004579489.1 other upstream 1425964 13070136 ~ 13080860 (-) True wsb1
TU267049 other upstream 1723591 13367763 ~ 13368850 (-) True G225622
TU268481 other upstream 4168217 15812389 ~ 15844783 (-) True G226830
TU268676 other upstream 4475125 16119297 ~ 16165036 (-) False G226991

Expression Profile