Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579490.1 |
| length | 1250 |
| lncRNA type | inter_gene |
| GC content | 0.49 |
| exon number | 6 |
| gene id | LOC113532936 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047608.1 |
| NCBI id | CM018554.1 |
| chromosome length | 25848897 |
| location | 11614599 ~ 11644172 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU265663 | lncRNA | downstream | 152660 | 11472056 ~ 11473209 (-) | True | G224375 |
| TU265662 | lncRNA | downstream | 156507 | 11469092 ~ 11469362 (-) | True | G224374 |
| TU265659 | lncRNA | downstream | 159626 | 11465953 ~ 11466243 (-) | True | G224371 |
| TU265658 | lncRNA | downstream | 161178 | 11464248 ~ 11464691 (-) | True | G224370 |
| TU265649 | lncRNA | downstream | 201010 | 11424629 ~ 11424859 (-) | True | G224361 |
| TU265920 | lncRNA | upstream | 195576 | 11839748 ~ 11841037 (-) | True | G224613 |
| TU265922 | lncRNA | upstream | 208844 | 11853016 ~ 11853582 (-) | True | G224615 |
| TU265943 | lncRNA | upstream | 257109 | 11901281 ~ 11901522 (-) | True | G224636 |
| TU266007 | lncRNA | upstream | 329210 | 11973382 ~ 11973834 (-) | True | G224700 |
| TU266008 | lncRNA | upstream | 329747 | 11973919 ~ 11976018 (-) | True | G224701 |
| XM_026924821.2 | mRNA | downstream | 48373 | 11549637 ~ 11577496 (-) | True | taok1a |
| XM_026924774.2 | mRNA | downstream | 79228 | 11536635 ~ 11546641 (-) | False | tp53i13 |
| XM_034310848.1 | mRNA | downstream | 79228 | 11536635 ~ 11546641 (-) | False | tp53i13 |
| XM_034310847.1 | mRNA | downstream | 79228 | 11536635 ~ 11546641 (-) | True | tp53i13 |
| XM_026924696.2 | mRNA | downstream | 91908 | 11528057 ~ 11533961 (-) | True | mmp20b |
| XM_026924969.2 | mRNA | upstream | 82351 | 11726523 ~ 11817784 (-) | True | dph1 |
| XM_026924616.2 | mRNA | upstream | 364263 | 12008435 ~ 12041025 (-) | True | rpa1 |
| XM_026924071.2 | mRNA | upstream | 399828 | 12044000 ~ 12049331 (-) | True | serpinf2b |
| XM_026924205.2 | mRNA | upstream | 405730 | 12049902 ~ 12065211 (-) | True | wdr81 |
| XM_026924226.2 | mRNA | upstream | 455138 | 12099310 ~ 12108019 (-) | True | slc47a4 |
| TU264952 | other | downstream | 1313382 | 10308060 ~ 10312487 (-) | False | LOC113533081 |
| TU263800 | other | downstream | 2678970 | 8941018 ~ 8946899 (-) | True | G222809 |
| XR_004579456.1 | other | downstream | 4162370 | 7392415 ~ 7463499 (-) | True | zgc:77784 |
| trnap-cgg_8 | other | downstream | 4430275 | 7195523 ~ 7195594 (-) | True | trnap-cgg_8 |
| TU261846 | other | downstream | 5601558 | 6021220 ~ 6024311 (-) | False | dynll2a |
| XR_004579509.1 | other | upstream | 1296738 | 12940910 ~ 13007559 (-) | True | nf1a |
| XR_004579489.1 | other | upstream | 1425964 | 13070136 ~ 13080860 (-) | True | wsb1 |
| TU267049 | other | upstream | 1723591 | 13367763 ~ 13368850 (-) | True | G225622 |
| TU268481 | other | upstream | 4168217 | 15812389 ~ 15844783 (-) | True | G226830 |
| TU268676 | other | upstream | 4475125 | 16119297 ~ 16165036 (-) | False | G226991 |
