RNA id: XR_004579459.1


Basic Information

Item Value
RNA id XR_004579459.1
length 426
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id LOC117599021
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 9887016 ~ 9895761 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caccACGTTACCTGCCGGTTTGACCTGCTGTAGATCCTTGAACATGGAGGACATAATCAAGAATTTTGTTGAAGCCAATTATAGGATGGTACAGTTCTGACTGCATTAAGAAACACTACAAGTCACAGTGTCTCACCATCATGGCCTCCTGAGCTGTAAGATGGGGCAGCAGTTTATCTTCCTGCATGATGTAACATGACATTTTGCGAAAGGTGTGAAGATCTCTGGGCTTTCCATTTACCAGGATTCGTCCTGTCATCCCTGTTTCTCTACCACACATTTGCATGCCAGCACAGAAAGCCAGCCAGGATGTTCATCAGAGTGGACTTTCCAGCCCCTGAGGGGCCCATGATCCCAATCAACTCCCGGCTCCAGAACCTTCCAGAGAGGCACTTGAGTAAGGCCCTGTAACCTGAAATGAAACAG

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579476.1 lncRNA downstream 80507 9804673 ~ 9806509 (-) False LOC117599044
TU264417 lncRNA downstream 80531 9802492 ~ 9806485 (-) True LOC117599044
TU264418 lncRNA downstream 80531 9802944 ~ 9806485 (-) False LOC117599044
XR_004579474.1 lncRNA downstream 128050 9758158 ~ 9758966 (-) True LOC117599042
TU264411 lncRNA downstream 173957 9710434 ~ 9713059 (-) False LOC113532707
TU264445 lncRNA upstream 35595 9931356 ~ 9978560 (-) True G223353
TU264514 lncRNA upstream 139981 10035742 ~ 10035982 (-) True G223408
TU264516 lncRNA upstream 143083 10038844 ~ 10039358 (-) True G223410
TU264545 lncRNA upstream 185820 10081581 ~ 10082117 (-) True G223437
TU264558 lncRNA upstream 193882 10089643 ~ 10089990 (-) True G223443
XM_026924311.2 mRNA downstream 20685 9839316 ~ 9866331 (-) True LOC113532742
XM_034310470.1 mRNA downstream 51929 9823069 ~ 9835087 (-) True LOC113532826
XM_034310471.1 mRNA downstream 64329 9717745 ~ 9822687 (-) True LOC117599039
XM_034310469.1 mRNA downstream 176269 9677259 ~ 9710747 (-) False LOC113532707
XM_034310468.1 mRNA downstream 176270 9677259 ~ 9710746 (-) False LOC113532707
XM_026924191.2 mRNA upstream 144981 10040742 ~ 10070727 (-) False ulk2
XM_026924190.2 mRNA upstream 144981 10040742 ~ 10070727 (-) True ulk2
XM_026923875.2 mRNA upstream 267646 10163407 ~ 10208971 (-) False sgsm2
XM_026923876.2 mRNA upstream 267646 10163407 ~ 10208971 (-) False sgsm2
XM_026923874.2 mRNA upstream 267646 10163407 ~ 10208971 (-) True sgsm2
TU263800 other downstream 940117 8941018 ~ 8946899 (-) True G222809
XR_004579456.1 other downstream 2423517 7392415 ~ 7463499 (-) True zgc:77784
trnap-cgg_8 other downstream 2691422 7195523 ~ 7195594 (-) True trnap-cgg_8
TU261846 other downstream 3862705 6021220 ~ 6024311 (-) False dynll2a
TU261738 other downstream 4083138 5797985 ~ 5803878 (-) False LOC113532612
TU264952 other upstream 412299 10308060 ~ 10312487 (-) False LOC113533081
XR_004579509.1 other upstream 3045149 12940910 ~ 13007559 (-) True nf1a
XR_004579489.1 other upstream 3174375 13070136 ~ 13080860 (-) True wsb1
TU267049 other upstream 3472002 13367763 ~ 13368850 (-) True G225622
TU268481 other upstream 5916628 15812389 ~ 15844783 (-) True G226830

Expression Profile