Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579474.1 |
| length | 681 |
| lncRNA type | intronic |
| GC content | 0.47 |
| exon number | 2 |
| gene id | LOC117599042 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047608.1 |
| NCBI id | CM018554.1 |
| chromosome length | 25848897 |
| location | 9758158 ~ 9758966 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU264411 | lncRNA | downstream | 45099 | 9710434 ~ 9713059 (-) | False | LOC113532707 |
| TU263847 | lncRNA | downstream | 714407 | 9037480 ~ 9043751 (-) | True | G222852 |
| TU263563 | lncRNA | downstream | 1209784 | 8544912 ~ 8548374 (-) | True | G222610 |
| TU263542 | lncRNA | downstream | 1266874 | 8464576 ~ 8491284 (-) | True | G222591 |
| TU263531 | lncRNA | downstream | 1351975 | 8404850 ~ 8406183 (-) | False | sorl1 |
| TU264417 | lncRNA | upstream | 43526 | 9802492 ~ 9806485 (-) | True | LOC117599044 |
| TU264418 | lncRNA | upstream | 43978 | 9802944 ~ 9806485 (-) | False | LOC117599044 |
| XR_004579476.1 | lncRNA | upstream | 45707 | 9804673 ~ 9806509 (-) | False | LOC117599044 |
| XR_004579459.1 | lncRNA | upstream | 128050 | 9887016 ~ 9895761 (-) | True | LOC117599021 |
| TU264445 | lncRNA | upstream | 172390 | 9931356 ~ 9978560 (-) | True | G223353 |
| XM_034310469.1 | mRNA | downstream | 47411 | 9677259 ~ 9710747 (-) | False | LOC113532707 |
| XM_034310468.1 | mRNA | downstream | 47412 | 9677259 ~ 9710746 (-) | False | LOC113532707 |
| XM_034310467.1 | mRNA | downstream | 51796 | 9677259 ~ 9706362 (-) | False | LOC113532707 |
| XM_034310466.1 | mRNA | downstream | 53811 | 9677259 ~ 9704347 (-) | False | LOC113532707 |
| XM_026924240.2 | mRNA | downstream | 54234 | 9677259 ~ 9703924 (-) | True | LOC113532707 |
| XM_034310470.1 | mRNA | upstream | 64103 | 9823069 ~ 9835087 (-) | True | LOC113532826 |
| XM_026924311.2 | mRNA | upstream | 80350 | 9839316 ~ 9866331 (-) | True | LOC113532742 |
| XM_026924191.2 | mRNA | upstream | 281776 | 10040742 ~ 10070727 (-) | False | ulk2 |
| XM_026924190.2 | mRNA | upstream | 281776 | 10040742 ~ 10070727 (-) | True | ulk2 |
| XM_026923875.2 | mRNA | upstream | 404441 | 10163407 ~ 10208971 (-) | False | sgsm2 |
| TU263800 | other | downstream | 811259 | 8941018 ~ 8946899 (-) | True | G222809 |
| XR_004579456.1 | other | downstream | 2294659 | 7392415 ~ 7463499 (-) | True | zgc:77784 |
| trnap-cgg_8 | other | downstream | 2562564 | 7195523 ~ 7195594 (-) | True | trnap-cgg_8 |
| TU261846 | other | downstream | 3733847 | 6021220 ~ 6024311 (-) | False | dynll2a |
| TU261738 | other | downstream | 3954280 | 5797985 ~ 5803878 (-) | False | LOC113532612 |
| TU264952 | other | upstream | 549094 | 10308060 ~ 10312487 (-) | False | LOC113533081 |
| XR_004579509.1 | other | upstream | 3181944 | 12940910 ~ 13007559 (-) | True | nf1a |
| XR_004579489.1 | other | upstream | 3311170 | 13070136 ~ 13080860 (-) | True | wsb1 |
| TU267049 | other | upstream | 3608797 | 13367763 ~ 13368850 (-) | True | G225622 |
| TU268481 | other | upstream | 6053423 | 15812389 ~ 15844783 (-) | True | G226830 |
