Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579477.1 |
| length | 775 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 2 |
| gene id | LOC117599045 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047608.1 |
| NCBI id | CM018554.1 |
| chromosome length | 25848897 |
| location | 5349680 ~ 5353368 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU261468 | lncRNA | downstream | 7114 | 5342069 ~ 5342566 (-) | True | G220816 |
| XR_004579502.1 | lncRNA | downstream | 334737 | 5013148 ~ 5014943 (-) | True | LOC117599070 |
| TU261338 | lncRNA | downstream | 353986 | 4948544 ~ 4995694 (-) | True | G220705 |
| TU261358 | lncRNA | downstream | 378644 | 4970235 ~ 4971036 (-) | False | LOC113544632 |
| XR_004579501.1 | lncRNA | downstream | 444383 | 4902623 ~ 4905297 (-) | False | LOC117599069 |
| TU261474 | lncRNA | upstream | 50713 | 5404081 ~ 5404283 (-) | True | G220822 |
| TU261478 | lncRNA | upstream | 63417 | 5416785 ~ 5416995 (-) | True | G220826 |
| TU261494 | lncRNA | upstream | 90124 | 5443492 ~ 5443702 (-) | True | G220834 |
| TU261521 | lncRNA | upstream | 101228 | 5454596 ~ 5454923 (-) | True | G220858 |
| TU261527 | lncRNA | upstream | 135407 | 5488775 ~ 5489008 (-) | True | G220864 |
| XM_026943386.2 | mRNA | downstream | 206713 | 5137303 ~ 5142967 (-) | True | kbtbd3 |
| XM_026943570.2 | mRNA | downstream | 235725 | 5110668 ~ 5113955 (-) | True | tomt |
| XM_026943504.2 | mRNA | downstream | 250690 | 5094843 ~ 5098990 (-) | True | folr |
| XM_026943501.2 | mRNA | downstream | 258081 | 5054916 ~ 5091599 (-) | True | inppl1a |
| XM_026943313.2 | mRNA | downstream | 361431 | 4978933 ~ 4988249 (-) | True | stard10 |
| XM_026924418.2 | mRNA | upstream | 40450 | 5393818 ~ 5403318 (-) | True | LOC113532789 |
| XM_034310860.1 | mRNA | upstream | 97907 | 5451275 ~ 5488244 (-) | True | LOC113532491 |
| XM_026923908.2 | mRNA | upstream | 182830 | 5536198 ~ 5549047 (-) | True | si:ch211-149e23.4 |
| XM_034310893.1 | mRNA | upstream | 197051 | 5550419 ~ 5599308 (-) | False | nectin3a |
| XM_026924796.2 | mRNA | upstream | 214850 | 5568218 ~ 5599308 (-) | True | nectin3a |
| TU260468 | other | downstream | 1532893 | 3740282 ~ 3816787 (-) | False | LOC113544484 |
| TU260466 | other | downstream | 1532893 | 3811560 ~ 3816787 (-) | False | LOC113544484 |
| TU260467 | other | downstream | 1532893 | 3811560 ~ 3816787 (-) | False | LOC113544484 |
| TU260175 | other | downstream | 2438515 | 2907326 ~ 2911165 (-) | True | G219651 |
| TU261666 | other | upstream | 356730 | 5710098 ~ 5710891 (-) | True | G220990 |
| TU261738 | other | upstream | 444617 | 5797985 ~ 5803878 (-) | False | LOC113532612 |
| TU261846 | other | upstream | 667852 | 6021220 ~ 6024311 (-) | False | dynll2a |
| trnap-cgg_8 | other | upstream | 1842155 | 7195523 ~ 7195594 (-) | True | trnap-cgg_8 |
| XR_004579456.1 | other | upstream | 2039047 | 7392415 ~ 7463499 (-) | True | zgc:77784 |
