RNA id: XR_004579500.1


Basic Information

Item Value
RNA id XR_004579500.1
length 1326
lncRNA type intronic
GC content 0.40
exon number 3
gene id LOC117599069
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 4902623 ~ 4905297 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGAGCCAATCACACAGGCCTGTGGGTCATCACACAgccagtcagagctgctgtatcctcctaagccccgcccactgtcATGCACTACATATAACAGTGAGGCATAATAAAAGCAGTGATGAGTCACAGCGATCTCACACCATTTCCCAGAAGGCTGTGTGATTACCCACGAGCCCTCACTGCAGTGATTCACTGAGGGGAACACTCCACATGCAATGCTCTGTGGCAGAGGTTGTTAAGTGTTTATAAAGGGAGAGAGTGTGAGGTTATTAGGTGTTTATAACTGGACAGAGTGTGAGATTATTTAGTGCTTATAATTGGACTGAGTTTGAGATTATTGATTGTTTATAATGGGACAGAGCGTGAGGTTATTTAGTGTTTATAACAGGACAGAGTGTGAGGTTATAAAGTGTTTATAACAGGACAGTGTGAGGGTATTGAGTGTTTATAACAGGACAGAGTGTGAGGGTATTGAGTGTTTATAACAGGACAGAGTGTGAGGGTATTGAGTGTTTATAACAGGACAGAGTGTGAGGTTATTGAGTGTTTATAACGGGACAGAGTGTGAGGGTATTGAGTGTTTATAACGGGACAGAGTGTGAGGTTATTAAGTGTTTATAACGGGACAGAGCGCGAGATTATTTAGTGTTTATAACAGGACAGAGTGTGAggttattaaatgtttataacaGGACAGAGCGTGAGATTATTTAGTGTTTATAACAGGACAGAGTGTGAGGTTATTAAGTGTTTATAACGGGACAGAGTGTGAGGTTATTAAGTGTTTATAACGGGACAGAGTGTGAGGTTATTAAGTGTTTATAACGGGACAGAGTGTGAGGTTATTAAGTGTTTATAACGGGACAGAGTGTGAGGTTATTAAGTGTTTATAACGGGACAGAGCGTGAgattattaattgtttataaCAGGACAGAGTATGAGGTTATTAAGTGTTGTGTTATAACAGTATTAAGTGTTGTAACAGGACAGAGTGTGAGGGTATTGAGTGTTTATAACAGGACAGAGTGTGAGGGTATTGAGTGTTTATAacaggacagagtgtgagagtattgagtgtttataacaggacagagtgtgagggtattgagtgtttataacgggacagagtgtgagGGTATTGAGTGTTTATAACAGGACAGAGTGTGAGGGTATTGAGTGTTTATAAAAGGACAGAGTGTGAGGTTATTAAGTGTTTATAACgggacagagtgtgagagtattgagtgtttataacgggacagagtgtgagagtattgagtgtttataacaggacagagtgtgagggtattgagtgtttataaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261319 lncRNA downstream 13410 4888864 ~ 4889213 (-) True G220694
TU261318 lncRNA downstream 14177 4887906 ~ 4888446 (-) True G220693
TU261315 lncRNA downstream 19183 4875644 ~ 4883440 (-) True G220690
TU261237 lncRNA downstream 285991 4616282 ~ 4616632 (-) True G220621
TU260949 lncRNA downstream 313070 4589344 ~ 4589553 (-) True G220362
TU261338 lncRNA upstream 43247 4948544 ~ 4995694 (-) True G220705
TU261358 lncRNA upstream 64938 4970235 ~ 4971036 (-) False LOC113544632
XR_004579502.1 lncRNA upstream 107851 5013148 ~ 5014943 (-) True LOC117599070
TU261468 lncRNA upstream 436772 5342069 ~ 5342566 (-) True G220816
XR_004579477.1 lncRNA upstream 444383 5349680 ~ 5353368 (-) True LOC117599045
XM_026943406.2 mRNA downstream 44216 4685721 ~ 4858407 (-) True LOC113544562
XM_034310565.1 mRNA downstream 44579 4685722 ~ 4858044 (-) False LOC113544562
XM_026943409.2 mRNA downstream 88792 4685722 ~ 4813831 (-) False LOC113544562
XM_026943411.2 mRNA downstream 88829 4685722 ~ 4813794 (-) False LOC113544562
XM_026943408.2 mRNA downstream 91904 4685722 ~ 4810719 (-) False LOC113544562
XM_026943558.2 mRNA upstream 7565 4912862 ~ 4971519 (-) False LOC113544632
XM_026943313.2 mRNA upstream 73636 4978933 ~ 4988249 (-) True stard10
XM_026943501.2 mRNA upstream 149619 5054916 ~ 5091599 (-) True inppl1a
XM_026943504.2 mRNA upstream 189546 5094843 ~ 5098990 (-) True folr
XM_026943570.2 mRNA upstream 205371 5110668 ~ 5113955 (-) True tomt
TU260468 other downstream 1085836 3740282 ~ 3816787 (-) False LOC113544484
TU260466 other downstream 1085836 3811560 ~ 3816787 (-) False LOC113544484
TU260467 other downstream 1085836 3811560 ~ 3816787 (-) False LOC113544484
TU260175 other downstream 1991458 2907326 ~ 2911165 (-) True G219651
TU261666 other upstream 804801 5710098 ~ 5710891 (-) True G220990
TU261738 other upstream 892688 5797985 ~ 5803878 (-) False LOC113532612
TU261846 other upstream 1115923 6021220 ~ 6024311 (-) False dynll2a
trnap-cgg_8 other upstream 2290226 7195523 ~ 7195594 (-) True trnap-cgg_8
XR_004579456.1 other upstream 2487118 7392415 ~ 7463499 (-) True zgc:77784

Expression Profile