RNA id: TCONS_00007950


Basic Information

Item Value
RNA id TCONS_00007950
length 723
RNA type processed_transcript
GC content 0.38
exon number 7
gene id XLOC_004160
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 26370381 ~ 26375575 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAGTCCACGCGGGTGGTTTTTGGTCTGTTTTCACCCTGTTGTATCTTGCTTGATGAGCGATATTCTATTAGGGAACTATTGTAATAATCAGGTAATTAGATTAAACAGTACTTTTATAACTCTTCGGCAAAATGGTCCGAGCAAGAAGGGCAGTAAAGAAGCCTAGAACAAAAAAGCAACAAGAATACGACAGTGATGATCCTGAAGCGTATACAAATGAAGCCATTCCTGATAAGAAATCTTCATCTTATGTGGAAGATAAAGTAGATGAATTCCACAATGAAAAAATATCAAAACTCTTAGCCCGAGGAGTTCCAGAAATCAGTGATGAAGAGGATGAAGATAAAGCGGTGGAGGTCATGCCCTTGACACTTTCTGAgtcagatgaagatgatgatgaagaaaaagaagaggaagaggatgatgatgatgatgaggaagaTGGGACAGACATGGAGAGCGATCTAGAAGGAAAGAAAGATGACGATCTCCCGAATGACTTGGCTTGGGGAAACAAAAAGAAGATTTTCTATGATACTGATTATGCCACAAAAAAGGGCAAATCTCTTGAAGAAATTGAGGCAGAAGACAAAGAAGAGGAAGACGAGGCTACAAAAATTCAAAAGAGATTAGCAGCTAAACTGAGCGAAGAAGACTATGATTTAAATCTGCTTGAagtactatattttatttatttaataaaggcACTGGTAGAGGCCAT

Function

GO:

id name namespace
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0032040 small-subunit processome cellular_component
GO:0005730 nucleolus cellular_component

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-040912-163 Enables enzyme inhibitor activity. Acts upstream of or within with a positive effect on cellular protein-containing complex localization; digestive system development; and protein localization to nucleolus. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Is expressed in several structures, including brain; digestive system; and endoderm. Orthologous to human UTP3 (UTP3 small subunit processome component).

Ensembl:

ensembl_id ENSDART00000139988

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008798 lncRNA downstream 897018 25475305 ~ 25476980 (-) False XLOC_004150
TCONS_00007926 lncRNA downstream 897018 25475305 ~ 25476980 (-) False XLOC_004150
TCONS_00008797 lncRNA downstream 897416 25475305 ~ 25476582 (-) False XLOC_004150
TCONS_00007924 lncRNA downstream 960845 25412343 ~ 25413153 (-) True XLOC_004148
TCONS_00007921 lncRNA downstream 965102 25368112 ~ 25408896 (-) False XLOC_004147
TCONS_00008799 lncRNA upstream 243916 26619434 ~ 26666495 (-) False XLOC_004162
TCONS_00007965 lncRNA upstream 1126687 27502205 ~ 27507973 (-) False XLOC_004167
TCONS_00007962 lncRNA upstream 1126991 27502509 ~ 27503132 (-) False XLOC_004167
TCONS_00008800 lncRNA upstream 1168060 27543578 ~ 27625465 (-) False XLOC_004169
TCONS_00007969 lncRNA upstream 1217125 27592643 ~ 27625125 (-) False XLOC_004169
TCONS_00007946 mRNA downstream 11664 26228918 ~ 26362334 (-) False XLOC_004159
TCONS_00007947 mRNA downstream 11704 26232146 ~ 26362294 (-) False XLOC_004159
TCONS_00007944 mRNA downstream 156488 26189703 ~ 26217510 (-) False XLOC_004158
TCONS_00007945 mRNA downstream 166860 26191291 ~ 26207138 (-) True XLOC_004158
TCONS_00007942 mRNA downstream 193284 25882617 ~ 26180714 (-) False XLOC_004157
TCONS_00007951 mRNA upstream 192974 26568492 ~ 26590401 (-) False XLOC_004161
TCONS_00007952 mRNA upstream 193314 26568832 ~ 26576754 (-) False XLOC_004161
TCONS_00007953 mRNA upstream 193329 26568847 ~ 26590429 (-) False XLOC_004161
TCONS_00007955 mRNA upstream 243615 26619133 ~ 26666627 (-) False XLOC_004162
TCONS_00007956 mRNA upstream 287106 26662624 ~ 26666501 (-) True XLOC_004162
TCONS_00007948 other downstream 136045 26233727 ~ 26237953 (-) True XLOC_004159
TCONS_00007943 other downstream 193284 26020099 ~ 26180714 (-) True XLOC_004157
TCONS_00007940 other downstream 442916 25857941 ~ 25931082 (-) False XLOC_004157
TCONS_00007931 other downstream 704043 25669839 ~ 25669955 (-) True XLOC_004152
TCONS_00007928 other downstream 841518 25528557 ~ 25532480 (-) False XLOC_004151
TCONS_00007954 other upstream 194013 26569531 ~ 26577209 (-) True XLOC_004161
TCONS_00007960 other upstream 372774 26748292 ~ 26748429 (-) True XLOC_004165
TCONS_00007963 other upstream 1127499 27503017 ~ 27503132 (-) False XLOC_004167
TCONS_00007964 other upstream 1127714 27503232 ~ 27503320 (-) True XLOC_004167
TCONS_00007974 other upstream 1337946 27713464 ~ 27719269 (-) True XLOC_004171

Expression Profile

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