RNA id: trnap-cgg_8


Basic Information

Item Value
RNA id trnap-cgg_8
length 72
RNA type tRNA
GC content 0.63
exon number 1
gene id trnap-cgg_8
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 7195523 ~ 7195594 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTCGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262663 lncRNA downstream 17227 7133517 ~ 7178296 (-) True G221814
TU262657 lncRNA downstream 71321 7122717 ~ 7124202 (-) True G221812
TU262485 lncRNA downstream 322164 6872831 ~ 6873359 (-) True G221683
TU262484 lncRNA downstream 323544 6871737 ~ 6871979 (-) True G221682
TU262483 lncRNA downstream 325249 6867784 ~ 6870274 (-) True G221681
TU262694 lncRNA upstream 23072 7218666 ~ 7220929 (-) True G221844
TU262771 lncRNA upstream 175776 7371370 ~ 7372320 (-) True G221902
XR_003403360.2 lncRNA upstream 380960 7576554 ~ 7577056 (-) True LOC113532601
TU263284 lncRNA upstream 936769 8132363 ~ 8132704 (-) True G222367
TU263294 lncRNA upstream 967039 8162633 ~ 8162848 (-) True G222377
XM_026923930.2 mRNA downstream 315 7187800 ~ 7195208 (-) True thap12b
XM_034310369.1 mRNA downstream 9259 7174352 ~ 7186264 (-) False map6b
XM_026923919.2 mRNA downstream 9260 7177987 ~ 7186263 (-) False map6b
XM_034310371.1 mRNA downstream 9260 7178013 ~ 7186263 (-) False map6b
XM_034310372.1 mRNA downstream 9261 7177997 ~ 7186262 (-) False map6b
XM_034310678.1 mRNA upstream 3237 7198831 ~ 7225546 (-) True dyrk1ab
XM_026924862.2 mRNA upstream 34324 7229918 ~ 7253606 (-) True alcamb
XM_026924739.2 mRNA upstream 80854 7276448 ~ 7283973 (-) True LOC113532980
XM_034310861.1 mRNA upstream 159586 7355180 ~ 7365143 (-) True LOC113532840
XM_026924050.2 mRNA upstream 176820 7372414 ~ 7376065 (-) True lim2.3
TU261846 other downstream 1171212 6021220 ~ 6024311 (-) False dynll2a
TU261738 other downstream 1391645 5797985 ~ 5803878 (-) False LOC113532612
TU261666 other downstream 1484632 5710098 ~ 5710891 (-) True G220990
TU260468 other downstream 3378736 3740282 ~ 3816787 (-) False LOC113544484
XR_004579456.1 other upstream 196821 7392415 ~ 7463499 (-) True zgc:77784
TU263800 other upstream 1745424 8941018 ~ 8946899 (-) True G222809
TU264952 other upstream 3112466 10308060 ~ 10312487 (-) False LOC113533081
XR_004579509.1 other upstream 5745316 12940910 ~ 13007559 (-) True nf1a
XR_004579489.1 other upstream 5874542 13070136 ~ 13080860 (-) True wsb1

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) trnap-cgg-219 True 72 mRNA 0.63 1 NW_023493868.1 9203 ~ 9274 (-)
eurasian perch (Perca fluviatilis) unassigned_transcript_1765 True 72 tRNA 0.63 1 NW_024375680.1 9494 ~ 9565 (+)
tiger barb (Puntius tetrazona) unassigned_transcript_1765 True 78 tRNA 0.54 1 NC_056709.1 2929193 ~ 2929270 (-)
tiger barb (Puntius tetrazona) unassigned_transcript_2151 True 72 tRNA 0.63 1 NC_056713.1 11820561 ~ 11820632 (+)
mexican tetra (Astyanax mexicanus) trnap-cgg_41 True 72 tRNA 0.63 1 NW_019172892.1 2756 ~ 2827 (+)