RNA id: TCONS_00007954


Basic Information

Item Value
RNA id TCONS_00007954
length 612
RNA type processed_transcript
GC content 0.44
exon number 4
gene id XLOC_004161
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 26568492 ~ 26590429 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gTTCTTTTGCAAAACTGGGTATTCATTAAAATGAGGATTAAAATCTGAGCAGAAAGGCTGAACAGAAAGGAAGTGAACCTGCTTCGTCATCTGACTCATTTGCTTTCCTGTTTTGAACATCGAGAAATATCATGCCTGTCACCTTTTAGCATGTTCCACTGTGAGAACTTGTGCTTTGACTTTGCAAAATCATGAAAGGACGGAGAGACAGAACGAGGTCATTCCTGTAGCTGTACATCATGTATAGCAGACAGAGGTGTGTCAGAGTGGTTTGACCAACGCTATGATCAGAAACAGAAACCTTACCTCACCGGCAGAGATGATGACGTAGATCCACTTTCTCTGAAGTGGTGGCTGTCTCTGCAGGCATCTGATGGAACGATTAAAGACGTCACTCAGAAGATGTTTAAGATAATTTCCCCTCCACATGAGGATGAAACACCACGGCAGAACCAGTGCCGGAAGTGTGCAGTTGTTGGGAACTCGGGGAACCTGTTAAAGTCCAAATATGGAGCCTTGATAGATTCTCACTCAACAGTTATTAGAATGAATAAGGCTGTAACTGTGGGTTATGACGAGGATGTTGGTAACCGAACCACCCACCACTTCTTG

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0003836 beta-galactoside (CMP) alpha-2,3-sialyltransferase activity molecular_function
GO:0008373 sialyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-286 Predicted to enable beta-galactoside (CMP) alpha-2,3-sialyltransferase activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; cardiovascular system; paraxial mesoderm; pectoral fin; and pleuroperitoneal region. Orthologous to human ST3GAL2 (ST3 beta-galactoside alpha-2,3-sialyltransferase 2).

Ensembl:

ensembl_id ENSDART00000172004

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008798 lncRNA downstream 1092551 25475305 ~ 25476980 (-) False XLOC_004150
TCONS_00007926 lncRNA downstream 1092551 25475305 ~ 25476980 (-) False XLOC_004150
TCONS_00008797 lncRNA downstream 1092949 25475305 ~ 25476582 (-) False XLOC_004150
TCONS_00007924 lncRNA downstream 1156378 25412343 ~ 25413153 (-) True XLOC_004148
TCONS_00007921 lncRNA downstream 1160635 25368112 ~ 25408896 (-) False XLOC_004147
TCONS_00008799 lncRNA upstream 42225 26619434 ~ 26666495 (-) False XLOC_004162
TCONS_00007965 lncRNA upstream 924996 27502205 ~ 27507973 (-) False XLOC_004167
TCONS_00007962 lncRNA upstream 925300 27502509 ~ 27503132 (-) False XLOC_004167
TCONS_00008800 lncRNA upstream 966369 27543578 ~ 27625465 (-) False XLOC_004169
TCONS_00007969 lncRNA upstream 1015434 27592643 ~ 27625125 (-) False XLOC_004169
TCONS_00007949 mRNA downstream 193956 26370381 ~ 26375575 (-) False XLOC_004160
TCONS_00007946 mRNA downstream 207197 26228918 ~ 26362334 (-) False XLOC_004159
TCONS_00007947 mRNA downstream 207237 26232146 ~ 26362294 (-) False XLOC_004159
TCONS_00007944 mRNA downstream 352021 26189703 ~ 26217510 (-) False XLOC_004158
TCONS_00007945 mRNA downstream 362393 26191291 ~ 26207138 (-) True XLOC_004158
TCONS_00007955 mRNA upstream 41924 26619133 ~ 26666627 (-) False XLOC_004162
TCONS_00007956 mRNA upstream 85415 26662624 ~ 26666501 (-) True XLOC_004162
TCONS_00007957 mRNA upstream 108773 26685982 ~ 26701611 (-) True XLOC_004163
TCONS_00007958 mRNA upstream 126972 26704181 ~ 27057572 (-) False XLOC_004164
TCONS_00007959 mRNA upstream 130053 26707262 ~ 26832685 (-) True XLOC_004164
TCONS_00007950 other downstream 194013 26373998 ~ 26375518 (-) True XLOC_004160
TCONS_00007948 other downstream 331578 26233727 ~ 26237953 (-) True XLOC_004159
TCONS_00007943 other downstream 388817 26020099 ~ 26180714 (-) True XLOC_004157
TCONS_00007940 other downstream 638449 25857941 ~ 25931082 (-) False XLOC_004157
TCONS_00007931 other downstream 899576 25669839 ~ 25669955 (-) True XLOC_004152
TCONS_00007960 other upstream 171083 26748292 ~ 26748429 (-) True XLOC_004165
TCONS_00007963 other upstream 925808 27503017 ~ 27503132 (-) False XLOC_004167
TCONS_00007964 other upstream 926023 27503232 ~ 27503320 (-) True XLOC_004167
TCONS_00007974 other upstream 1136255 27713464 ~ 27719269 (-) True XLOC_004171
TCONS_00007992 other upstream 1500939 28078148 ~ 28086924 (-) False XLOC_004178

Expression Profile

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