RNA id: TCONS_00007957


Basic Information

Item Value
RNA id TCONS_00007957
length 2353
RNA type mRNA
GC content 0.44
exon number 18
gene id XLOC_004163
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 26685982 ~ 26701611 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACGTCATCAATGTGAGACGAAAACGGGTGAAAGGTGTTTCAGTGTGAGTCGTAGGGTGATTCGTAATTAGGGTAAATATCAACGTTGAAGATGAGCCTGAACAAATTTATTGTTTTGTCAAGATCTGTAAGGCGTGGGAGGAATTTATTCGCTGTTCGTGTCGCGCAAACAGGAGAATATCTTTATCAGTTTCAGTCGCAGCGCTTCATTAGGTCCAGCTCGAGGAGTTTAGCTTATGCAAAAGATCTGTTCCTGGGCAAAGTTAACAAGAAAGAAGTGTTTCCCTATCCAGAAATCAGCAATGAAGAATTAGAAGAGTTAAACCAGTTTGTTCAGCCTGTGGAAAAGTTTTTCAATGAAAGTGTTGACTCTGCGAAGATCGATAGGGAGGCCAATATTCCCCCTGAGACTTTGGATGGACTAAAAGAACTGGGTCTGTTTGGGATCCAGATACCTGAAGAATATGGGGGCCTGGGACTCTCAAACACCATGTATGCCAGGTTAGGAGAGATCACGTCTTTAGATGGGTCTATTGCAGTCACACTTGCAGCACATCAGGCCATCGGCCTGAAGGGTATATTAATAGCTGGAACGGATGCTCAGAAAGCAAAATATCTGCCCAAACTAGCAACAGGAGAACATATAGCAGCTTTCTGCCTCACCGAACCTGGAAGTGGCAGTGATGCTGCATCTATACAGCTGAGAGCCACGCTAACAGAAGATGGGAAGCACTACCTGCTCAATGGCACAAAGTTTTGGATTTCCAATGGTGGATGGGCAGACATCATGACTGTGTTTGCCAGAACTGAAGTTGTTGATAAAGATGGTCAAAAGAAAGATAAGATCACAGCGTTCATTGTGGAAAGAGCATTCGGTGGAGTCACCAGTGGAAAACCTGAAGACAAACTGGGCATCAGAGGGTCAAACACGACTGAGATCACATTTGAAGACACAAAAGTGCCTATCGAGAACGTAATTGGTGAAGTTGGTGATGGTTTTAAGGTCGCAATGAACATCCTGAATAATGGGCGCTTTAGCATGGGCGGTGCAGGTGCAGGGGTGGTCAAGAAACTCATTGAGCTGTCAGCAGAATATGCAGGCACAAGAAAACAATTCAACAGAAGGCTTTCAGAGTTTGGAATGATTCAGGACAAGTTTGCCACTATGGCCCTGAATGTGTATGTGATGGAGAGTATGGCGTACCTCACTGCTGGAATGATGGACCGCCCTGGACTCCCAGACTGCTCTCTGGAGGCCGCGATGGTCAAGGTCTTTAGTTCTGAGGGCACCTGGATCTGTGTGAGTGAAGCTCTGCAGGTTTTAGGAGGTCTGGGTTTCACTAAGAACTACCCCTACGAGCGCTACCTCAGGGACTGCCGCATCCTCCAAATATTTGAGGGCACTAATGAAATTTTGAGGATGTACGTCGCACTTACAGGGATGCAGTATGCTGGCAAAATATTAACTGGAAAAATAAAGGAGATGAAGAAAGGAAATTTAGGCGTGGTGTTCGAGATTCTGGGGAAGAAAATCAAGGACACAGTGCAGACGGCAGATTTTGGGCTCACCGGCAAAGATGGTGTTGTTCATCCCAGTCTGACGGAGAGCGCCAAAATGTTTGAGCAGAACGCTGCATGTTTTGGCTCCACTGTTGAAGGTTTGCTGTACCGATATGGAAAGACAATTGTCGATGAGCAGCTtctgttgaagaaagttgcagaTGTGTTAATTAACCTCTACGCCATGACAGCCGTCCTGTCCCGCTCCTCTCGCTCCATCTCCATCGGCCTGCGCAACCATGACCATGAGGTGCTGCTCACCAACACTTTCTGCAAGGATGCTCATTTCAAGAACAACTACATGTTGAGTCAGCTTCAAAGATATTCCCCAGAGAATGATGATGCCAACATAAAGAAGATCGCCCAGGATGTCTTAGCCAAGAGGGCATATATCTGCTCACATCCCCTGGAAAGAACCTTCTGACGCACACTTGTGTCTTAGTTTTAACCCAACAGAAGTGCTTTGATTATTAAATATACTTATGTTTCTCACAATATGCAGTATTAATTAAGCCTCATACTGTAATGAAGTAGTCCTTTTATATCAGTATGTCCCAATTTAAAGGCTTTTgcacactcagtgcatcacagCAGCGCATTGAAGGCCGTCCCATTTGGAAACATATCCTCAAAATGTGTCTTTTGTTTCCTGGGCCACTGATGACATTTGTTGTGCACAGGAAATAACAggtgtgttgttttttatttttaaatgtaagtatTAGGTATCAACTTGCTTATATCTAACAGTTCTatgtacaaaaaaaacaatattaaatgttaaaaaacatta

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005739 mitochondrion cellular_component
GO:0000062 fatty-acyl-CoA binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0017099 very-long-chain-acyl-CoA dehydrogenase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-060616-196 Predicted to enable fatty-acyl-CoA binding activity and very-long-chain-acyl-CoA dehydrogenase activity. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 20. Orthologous to human ACAD9 (acyl-CoA dehydrogenase family member 9).

Ensembl:

ensembl_id ENSDART00000083010

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008799 lncRNA downstream 19487 26619434 ~ 26666495 (-) False XLOC_004162
TCONS_00008798 lncRNA downstream 1209002 25475305 ~ 25476980 (-) False XLOC_004150
TCONS_00007926 lncRNA downstream 1209002 25475305 ~ 25476980 (-) False XLOC_004150
TCONS_00008797 lncRNA downstream 1209400 25475305 ~ 25476582 (-) False XLOC_004150
TCONS_00007924 lncRNA downstream 1272829 25412343 ~ 25413153 (-) True XLOC_004148
TCONS_00007965 lncRNA upstream 800594 27502205 ~ 27507973 (-) False XLOC_004167
TCONS_00007962 lncRNA upstream 800898 27502509 ~ 27503132 (-) False XLOC_004167
TCONS_00008800 lncRNA upstream 841967 27543578 ~ 27625465 (-) False XLOC_004169
TCONS_00007969 lncRNA upstream 891032 27592643 ~ 27625125 (-) False XLOC_004169
TCONS_00008801 lncRNA upstream 891032 27592643 ~ 27625455 (-) True XLOC_004169
TCONS_00007955 mRNA downstream 19355 26619133 ~ 26666627 (-) False XLOC_004162
TCONS_00007956 mRNA downstream 19481 26662624 ~ 26666501 (-) True XLOC_004162
TCONS_00007953 mRNA downstream 95553 26568847 ~ 26590429 (-) False XLOC_004161
TCONS_00007951 mRNA downstream 95581 26568492 ~ 26590401 (-) False XLOC_004161
TCONS_00007952 mRNA downstream 109228 26568832 ~ 26576754 (-) False XLOC_004161
TCONS_00007958 mRNA upstream 2570 26704181 ~ 27057572 (-) False XLOC_004164
TCONS_00007959 mRNA upstream 5651 26707262 ~ 26832685 (-) True XLOC_004164
TCONS_00007961 mRNA upstream 784973 27486584 ~ 27501027 (-) True XLOC_004166
TCONS_00007966 mRNA upstream 809666 27511277 ~ 27537661 (-) False XLOC_004168
TCONS_00007967 mRNA upstream 818710 27520321 ~ 27537650 (-) False XLOC_004168
TCONS_00007954 other downstream 108773 26569531 ~ 26577209 (-) True XLOC_004161
TCONS_00007950 other downstream 310464 26373998 ~ 26375518 (-) True XLOC_004160
TCONS_00007948 other downstream 448029 26233727 ~ 26237953 (-) True XLOC_004159
TCONS_00007943 other downstream 505268 26020099 ~ 26180714 (-) True XLOC_004157
TCONS_00007940 other downstream 754900 25857941 ~ 25931082 (-) False XLOC_004157
TCONS_00007960 other upstream 46681 26748292 ~ 26748429 (-) True XLOC_004165
TCONS_00007963 other upstream 801406 27503017 ~ 27503132 (-) False XLOC_004167
TCONS_00007964 other upstream 801621 27503232 ~ 27503320 (-) True XLOC_004167
TCONS_00007974 other upstream 1011853 27713464 ~ 27719269 (-) True XLOC_004171
TCONS_00007992 other upstream 1376537 28078148 ~ 28086924 (-) False XLOC_004178

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_03814414_03823373.mRNA True 1893 mRNA 0.48 18 CI01000306 3814414 ~ 3823373 (-)