RNA id: TCONS_00007958


Basic Information

Item Value
RNA id TCONS_00007958
length 7336
RNA type mRNA
GC content 0.46
exon number 16
gene id XLOC_004164
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 26704181 ~ 27057572 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttttatttgtagtaTAACATCTGCTAATTTTAAAAGGGAAAGATATTTTTAGCTGGTCGAATGGGGAATGGGGAGAACAACTTGGCCAAGCTAGTTAGGGCTCCTAAAGTCAACATACCACTGCTGTTTTATTTCAGCAGCTGGGAGACCTGCTTGATCACCAATACCAGTCTAATTACTCAACATAAAGCAAACAAAGCTTTTATGTTTATGCTTTTAACTTGCATAAACATGTACCATGCTATCACTACTAGCGCAGTAAACACAGCTTACCTTCACAGTCCTCCCACTGAAGGGTTAAACGGATTTAGCATCCACGGAGCGGGTTAGTTATTGTGGCGCAGCGCAGAGCCTCTGGACGGCGCGCTGCAGCGGACGAGCGCTCGAGCGCAACTTCAGTACTCAGTGCTGAGCGCCGACAGCAGTCAGCAGTaccagcaaacataaacaatggCGGAGCGGCTGTAAACCCAGCTCAGCGGATCAAATTTGCCCCATGGACGGGCATTTCGCCTACATCGACATGGAAAACCCGACCGAAAACCCCAGCAAGGCGGCGGAGTACCTGAAAGAGCTGAATAAAATCATCGAAACCCAACAGGAGTTGCTGGAGAAGCAGAAGAATAGGATTGAAGAGCTCGAACAGCAAGTGTGTGATCTTTGTCAAGAAAACGCGTGCTTGAAGGATCAGCACCAGAGGCACCTGGCCACCTGCAGACTGCAACAACAGGGCAACAGTCACCCCACGCTGGGTGCCATAAAGGAGAATGTGATCCAAGAAAAGAATGAAAGTGAGGGCCTGCGTGTCTCAAATGTCAGACGGCACGCTTCTTTGCCCCTCGATGTCACAGATAACCCTGGCAACTTTATTGTGTCGCACTGTCAAAGAAGTTACCCCTGTCGCAAATGGAAGTCTGCATCTCTTGGTGTGGAAGGTGAGGCTCCGGGCGGCGAGTCGGGCCCCTCTCTGGACAATAGTGGAGGTTACTTACGAGGACCGGTGAGCCGCAGTGCTATCATCAGTGGCGAGCACTTTGACGGCCCACCGTTGTACGCTCACGAGGTACGGCAGCGCCCACGGAGACCCAAACTCCAGCATTCTCAGTCCATTCTCCGCAAACAGGCTGAGGAGGAGGCCATCAAACGCTCCCGATCGCTGTCTGAGAGCTATGAGCTCTCCACCGACCTCCAAGACAAACAGGTGGAGATGCTTGAGCGGAAGTATGGAGGGCGTTTTATAACCCGACATGCTGCACGAACAATCCAGACTGCATTCCGCCAGTATCAGATGAACAAGAACTTTGAGCGCCTCCGGAGTTCTATGTCAGAAAACCGCATGTCCAGACGTATAGTTTTATCCAATATGAGAATGCAGTTTTCATTTGAAGGACCTGAAAAAGTCCACAGTTCATACTTTGAGGGCAAGCAGGTGTCACTTACGGATGATGGGTCTAAACTAGGAGCATTGGTACAATCTGAGCGCGGTGAGATGGTCCCCGCCAACATGAAGTCACCTGCGGTCCAGAGCGATTTCACAGACGCCATTACAGAACTGGAGGATGTTTTCTCTCGACAAGTGAAGTCATTGGCAGAATCGATAGACGATGCACTGAACTGTCGTAGCCTACACGGAGACGAGGGACAGTCAGAAGCAACCAGAGGTCATCCAGACTTGGAGCAAGAGGTTACCTACCAGGTCAAGCCTTCCCACGGTAGCGAGCACCGAAAGCGAGATGAGATGACAGCCTCCTACAGCGATGTGACACTTTATATAGATGAGGAAGAGCTCTCGCCACCTCTTCCTTTATCACAATCAGTTGACAGACCCTCTAGCACTGAGTCAGACCTCCGTCTACGTTCTTTGAACTCTTCGCAGGACTACTGGTCTCTAGCTCATAAGGATGAAAAGGCCGACACGGACACTAGCTGCCGCAGCACCCCATCTCTAGAGTGTCAAGAGCAAAGATTGAGAATAGACCACCTTCCTCTGCTCACTATCGAACCTCCGAGTGATAGCTCTGTTGAGTTGAGTGACCGCTCTGACCGAAGCTCTCTCAAGAGACAGAACGCTTACGATCGAGGCATAGCCAGCCAGCAGGGCAGCCCTAAACACATCCCTTCCCATGCACTCCCACCAAGGGGGCCAGCAAGAGAGGATGAAGCTCCACGCCATCGGCCGCGGCAGCTGGAAAGCCATCTGGCTATCAATGGCACCGCCAACCGGCAAAGCAAATCCGAGTCTGACTTCTCTGATGGTGATAATGACAGCATCAACAGCACTTCCAATTCCAATGATACGATCAACTGCAGTTCGGAGTCCTCTTCCAGGGACAGTCTTCGAGAGCAGACTCTCAGTAAGCAGACGTATCACAAGGAGACACGAAACAGTTGGGACTCGCCAGCATTTAGCAATGATATCATCCGCAAGAGGCACTATCGAATTGGCCTGAACCTTTTCAACAAGAAACCTGAAAAAGGCATCCAGTATCTGATTGAGCGAGGATTTGTCCCAGACACACCTGTGGGAGTTGCCCATTTCCTGTTACAGAGAAAAGGGTTGAGTCGACAGATGATTGGCGAGTTCCTGGGCAACAGGCAGAAACAGTTCAACAGAGATGTTCTTGACTGTGTGGTAGATGAGATGGATTTCTCTGCAATGGAGCTGGATGAAGCCTTGAGAAAATTCCAGGCACATATCCGGGTGCAGGGAGAGGCACAGAAAGTGGAGAGACTAATTGAAGCCTTCAGTCAGCGCTACTGCATCTGCAACCCGGGGGTGGTACGGCAGTTTAGGAACCCAGATACCATCTTCATCCTGGCGTTTGCCATTATACTCCTCAACACAGATATGTACAGCCCGAATGTGAAGCCAGAGAGGAAGATGAAACTAGAGGACTTTGTGAAGAACCTTCGCGgAGTGGATGATGGAGAGGACATCCCGAGAGAGATGTTAGTGGGCATCTATGAGCGAATTCGTAAACGAGAGCTTAAGACGAATGAAGACCATGTGTCCCAAGTGCAAAAGGTGGAGAAACTCATCGTGGGCAAAAAGCCGATCGGCTCTCTGCATCATGGCCTCGGATGTGTTTTGTCTCTGCCACATCGCAGACTGGTCTGTTACTGTAGACTGTTTGAAGTCCCGGACCCCAACAAACCTCAAAAACTGGGTCTCCACCAGAGAGAAATCTTCCTGTTCAATGACCTTCTAGTGgtcACTAAGATTttccagaagaagaagaattcggTGACGTACAGTTTCAGGCAGTCCTTTTCTCTCTACGGGATGCAGGTGCTGCTGTTTGAAAACCAGTATTACCCCAATGGAGTGCGTCTCACTTCAGCTCTTCCAGGCGCAGACATCAAGGTTCTCATTAACTTCAATGCCCCAAACCCGCAAGACCGTAAGAAGTTCACTGATGACCTGCGTGAGTCCATCGCAGAGGTGCAGGAGATGGAGAAATACAGGATAGAGTctgaaTTGGAGAAGCAGAAAGGTGTAGTCCGTCCTAGCATTTCACAGAGCTCAGGGTTGAAAAAAGAAACGGGGAACGGCAATTTGAGTCGGACCAGTCTGGATGATAGCTATGCCATGGGGGAAGGCCTGAAGAGAAGTGCCCTCAGCAGCTCCTTACGTGACCTTTCAGATGCAGGCAAGCGGGGGCGCCGCAGCAGTGCAGGATCTCTAGACAGCAATATGGAAGGGTCCATCATTAGCAGCCCCCACATACGGCGAAGAGCCACTTCCAGCCGCGACTGTCCCTCCCGCCAGCAGTCTATCCCCAATTCCTCCTCTCTGCTGGGTTCTCTATTCGGCACCAAACGAGGCAAATCTCCCTCCCTGCCATCCCAGTCGTCCCACCCTTCCCATCCAACACTCATCTCTCACACCCCTCACCCTTCTAACCTGCACCACACGGCCCGCGACGGCGTCACCGTCACCGAAACCCAAGCCCAGATGCACCCGCACCACGCTCAATTCTGCCACATGCAGAATCCCCCTCCGTACCACCACCACCATCACTACCACCCTCCAGCGCACATCCAACACCCACCCCACCAGTACCACCCTCCACCCGGCCCCTCATCCTCTCACAGCCACTCACACAGCCAACACGGCCACGGTCCGCATCCGTCCCACTCATCCCACCCGtcccactcccagcatgcaccacACCACCACAGCCAGCCTCCAGCGCCTCCACCCGCGGCCAGCAGCACCAAGCCCAAACACAGCGGCATCAGCACTGTGGTTTGAGCCACTCCACGAACTCTTTCCACTCGGGAATGGGACTGTTTTAGATCGTTGCTGCGAACAAAAGGGCACCTTGACTCACGTTTCAACCCATCCAGCGCCCGTTTCCCACTGGAAGGGGAGCCACACTGTGTAGCACCGGCCTTCAGGGGGGACGGCTAGAACTCAAATCATCAGTTCTTACCAAGTCATCGCTCAAGCTGTAGAGCCCCAGACAAAAACTGCGGCTGCTGCTTCTTTTAGGCTCGATTTTAGAGACTTTGGACCCTTTCGACGTTGGCGGTGAAGCAAAGAGCATGCGCAAAAAGACCGTGGCAACTGTTTTCTTGTACTTAATTACCTAAAATGCATTATCAAAAGTAGCCTGCTTATTAGTTTGCAGAGACGACAGGGTCTGTCGGATTCGGTCACAACGAGTGGTGTTCCAGTATTTAATGTAGCTGTAGACCACACATTTCTGTGATAGAGATTAGGGGACTATAACGTGCCAATTATTAAAAAGCAGTTGAGTGAgttattcaaaaaagaaaagatttgcTTTGTGTATGTCGTGCATAtagtattttgtaaaataatgataataatattagcagctattattattattgttatagaacaaaaatgatccgaagcctcagaattaaaaaaagaaaaagaaaaaaaacaactctcAGTATTCTCTGTGTACTCTCGACGTAGTTTTCCACTCAGTAGGTGGCCGATTgattaatatggaaattattggTTGCCTTTGGAGCTGGAAGATTCTTCCCGAATCTCCAGCTTGTGTTCGCTCCGCCTCCTTTTTGGGGATCCACGTAGCGCAAACCAATCACAGGGACTGTAGGAAGTCATTGATGGATCCTCCACGGCCTCGACTCGTCGGGCCACTGCTGCAacatggttttatttttttaactatttttttagagatgaataaaacaatatgaaATAATTGTACATTTGAAGATGTTTATGGTAAAGCCGGCGCGCGCGGCGGAGAAGGCTATTTTGACGTAGCGTTTGTGTCCGGAGAAATCTGATGGAATTCTCTCCCCATATTTCAAGAGTTAGTTTGTGCAGAGATGTTGATTTTTCTCAGCAGGCTGAGCGTGTGTGCCCTCTCCTGCGTGGAAATGATGTAGATTTGATACATTTTTCTTCGGTCCTCCTGTGAGAATGCCTTTCACTTGCTCAGAAACACagctaatgtaatgtaatctaatgtaatgtaaCTGCATATAATATGCAGCAGTGGGTCGGATGGATGTGTTCTCGCTCGGAACGGATTTGgacatgttcttttttttttcacacatatCCCCCTTTCTCGGTTCAATTTTTGACTTGTTTTATACTGTAAGTAAATCAATGGTGACAGAGCTGTGATTCGATGTAATAGTTTTGTGTGTCGACGCTCTCTTTTAACTCAAGCACAGAGCTTCTGAACAGCACTTGTCTTTGTAAATATTCACTTAATGTACAGAAACCACGGCTGAAATGAGCTCGTTCTCTAATACGAGACCCTTGTGGCATTTGCTGTGCGATGTTTCTCTTGTTTCTGATTcctttttgtttcgttttttaaattaatcatgTGCAATATGTATGTTTCAGTTTTGTAAATTCAGAATTGCGACCAACCTGTTTGTTCGTTTGTCGtttttaataatttctaatatcatgcataaaaaaaaaacattttatgtttcTCGCCCCCATCGCCATCTTTGTTGGTCTCTGTTTTACCTGCAACCTACAGTCAGGAATGTCAACTAAAGTACTCTTTGCATGTATAGTGTACAAAATAATCTCTAGATATTGCATACTTCCAGAGATATTATCAGTGTTACAGTTGACCGTTGTTAAATGagtgatgatgacgatgatgatgatcatattaaaatctgtagACTTCTCTTCATTCAAGACGTCTGTATCCTGTTTCGTACTGAAATAGATTCAATTAGGACACATCTGTTTGTTTACCTGGGCTTAAAAATCAAATACCGATCGTCAAATAGTGTTTAAACCAACGTTAGCCTAATCGTAATCAAGCGCCACCAGAGAACATTAGTATAATAATAGAAGCTTATGGATATTAGAGCATAAATCTGTGTCTATATCAGACTTCATAACACCTGGCTTGTTCCCAAGATACACCGAGGCCAGTAATTTGTACAGAACACCATTAATCAGACTGTGTATGATCATCTGAAGCCATTTCTGACTAAACAACCAAATGAGTACGTctctttctacattttttttctcaactttgtgttgattgtttttttttttttttaaggatttcagtgcagtgtttttgtaaatgtaatgtgGTGCTTCAGCTTTGTACTGTATCGGACAAGTCAAAATGTCACAAAGCTTTTGCATGCAGCTGATGCCTAGCACCTCTGGTTGAAATgtaagcttatttaaaaaaacgaAATGAAGAAATGTGctttcttttaattattattttttttctaatattatgtttgtttgtttgtttgtttgattggttggttttattatttcatttaagcTTGCTGTTACATTTTACACCGTGCCACAGCATTTTCGGCATGTATATCACTTGTTGTTTGCCCTCCTAAAACAGATCATTTCTTTCTTCCCTcatgtaaaatcactgtatataTCACAAACCAATGTGAGAAATTAGAAAGCATATCATATATAAATCTAATATGGATGATAAAGGGAAAGTCTAAGGGGGTTTAGCGTGTACATAGCCTGTattatacttttttgtttttcactcAGTCATCGCATCGACGGTGTAGTCCTTTTCCACTTTCAAGAGACTCATAATAACACTGCTTCTGCTACCAAATGTACTTTGAATTTGTCATAGGATCTTCTTTAATAAGCCGACTGTTACATGACTCTCACCGCCTTCCACTcaaacattcatttcattttttttttattaccaaaCGAGGAGAGGAGAACTATGGTTTTAATATGCATTCTGTTTCTAAGTAGATGACGAGACCCTATTGATGTTTAACTATAACTGTGACCATGTTGAGaacatgaaataaaacaatataccATCAA

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0001525 angiogenesis biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0001944 vasculature development biological_process
GO:0001946 lymphangiogenesis biological_process
GO:0032012 regulation of ARF protein signal transduction biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-120813-1 Acts upstream of or within angiogenesis and lymphangiogenesis. Predicted to be located in cytoplasm. Is expressed in liver. Human ortholog(s) of this gene implicated in intellectual developmental disorder with short stature and behavioral abnormalities. Orthologous to human IQSEC1 (IQ motif and Sec7 domain ArfGEF 1).

Ensembl:

ensembl_id ENSDART00000043091

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008799 lncRNA downstream 37686 26619434 ~ 26666495 (-) False XLOC_004162
TCONS_00008798 lncRNA downstream 1227201 25475305 ~ 25476980 (-) False XLOC_004150
TCONS_00007926 lncRNA downstream 1227201 25475305 ~ 25476980 (-) False XLOC_004150
TCONS_00008797 lncRNA downstream 1227599 25475305 ~ 25476582 (-) False XLOC_004150
TCONS_00007924 lncRNA downstream 1291028 25412343 ~ 25413153 (-) True XLOC_004148
TCONS_00007965 lncRNA upstream 444633 27502205 ~ 27507973 (-) False XLOC_004167
TCONS_00007962 lncRNA upstream 444937 27502509 ~ 27503132 (-) False XLOC_004167
TCONS_00008800 lncRNA upstream 486006 27543578 ~ 27625465 (-) False XLOC_004169
TCONS_00007969 lncRNA upstream 535071 27592643 ~ 27625125 (-) False XLOC_004169
TCONS_00008801 lncRNA upstream 535071 27592643 ~ 27625455 (-) True XLOC_004169
TCONS_00007957 mRNA downstream 2570 26685982 ~ 26701611 (-) True XLOC_004163
TCONS_00007955 mRNA downstream 37554 26619133 ~ 26666627 (-) False XLOC_004162
TCONS_00007956 mRNA downstream 37680 26662624 ~ 26666501 (-) True XLOC_004162
TCONS_00007953 mRNA downstream 113752 26568847 ~ 26590429 (-) False XLOC_004161
TCONS_00007951 mRNA downstream 113780 26568492 ~ 26590401 (-) False XLOC_004161
TCONS_00007961 mRNA upstream 429012 27486584 ~ 27501027 (-) True XLOC_004166
TCONS_00007966 mRNA upstream 453705 27511277 ~ 27537661 (-) False XLOC_004168
TCONS_00007967 mRNA upstream 462749 27520321 ~ 27537650 (-) False XLOC_004168
TCONS_00007968 mRNA upstream 463941 27521513 ~ 27537593 (-) True XLOC_004168
TCONS_00007970 mRNA upstream 586952 27644524 ~ 27702778 (-) False XLOC_004170
TCONS_00007954 other downstream 126972 26569531 ~ 26577209 (-) True XLOC_004161
TCONS_00007950 other downstream 328663 26373998 ~ 26375518 (-) True XLOC_004160
TCONS_00007948 other downstream 466228 26233727 ~ 26237953 (-) True XLOC_004159
TCONS_00007943 other downstream 523467 26020099 ~ 26180714 (-) True XLOC_004157
TCONS_00007940 other downstream 773099 25857941 ~ 25931082 (-) False XLOC_004157
TCONS_00007963 other upstream 445445 27503017 ~ 27503132 (-) False XLOC_004167
TCONS_00007964 other upstream 445660 27503232 ~ 27503320 (-) True XLOC_004167
TCONS_00007974 other upstream 655892 27713464 ~ 27719269 (-) True XLOC_004171
TCONS_00007992 other upstream 1020576 28078148 ~ 28086924 (-) False XLOC_004178
TCONS_00008006 other upstream 1533316 28590888 ~ 28595428 (-) True XLOC_004184

Expression Profile

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