RNA id: TCONS_00007967


Basic Information

Item Value
RNA id TCONS_00007967
length 780
RNA type mRNA
GC content 0.49
exon number 6
gene id XLOC_004168
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 27511277 ~ 27537661 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGATACAAATGCACGCGCCCGCGTCTGCTGTTGATTCATGCTTTTGCATTTCACCATGAGTTCAGTGGAAACAATGGTCTTCAGCTAACAGAATCCGCACCCACGGACCGAGTGTCGGTCATGGCAGCAGGTGTTAGTTTGGTGAGTGATCTGCCCTACTCCACCAGCAGAGAGTCCAACACTGACATGGAGACAGTTAATGTCCGAGTACCCACGGCGAAGTACACCAAGGTGGGTGAGACTTTGAGGCATGTCATCCCAGGACATATGCAGTGCTCCATGGCATGTGGAGGTCGAGCATGCAAATATGAAAACCCCTCTCGCTGGAGCGACAAGGAGCAAGCCGTCAAAGGACTCTACTCCTCATGGATAACCGATCACCTGTTAGCCATGGCAAGACCTTCAACTGAAATCGTTGAAAAATTCAACATCATTGAACAATTCCATGTATGTGGTTTGAAGACTGTAATCAACCTGCAGCGTCCAGGGGAACATGCGAGCTGCGGCAGCACTCTGGAGCCAGAGAGCGGCTTCACTTATCGCCCAGAGCTTTTCATGGAGGCAGGGAgtactgaccaggctcagccctacttggcttcagtgagtaaccggtctcgGGCtgtagggtgatatggctgtggctataCATGGGCAAGAGCTGTGGCTGTTTATTTGCAATGTTGAGGACGTGTATGTTTTAATGTTCATCACATTGGTATTTGTGCTTCTCCTAAATACTgctgtctatttaaaaaaataaaatcatttgtgTACAATC

Function

GO:

id name namespace
GO:0030030 cell projection organization biological_process
GO:0060271 cilium assembly biological_process
GO:0016311 dephosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-632 Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in cilium assembly. Predicted to act upstream of or within cell projection organization and dephosphorylation. Predicted to be active in cytoplasm. Orthologous to human PTPDC1 (protein tyrosine phosphatase domain containing 1).

Ensembl:

ensembl_id ENSDART00000172895

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007965 lncRNA downstream 12348 27502205 ~ 27507973 (-) False XLOC_004167
TCONS_00007962 lncRNA downstream 17189 27502509 ~ 27503132 (-) False XLOC_004167
TCONS_00008799 lncRNA downstream 853826 26619434 ~ 26666495 (-) False XLOC_004162
TCONS_00008798 lncRNA downstream 2043341 25475305 ~ 25476980 (-) False XLOC_004150
TCONS_00007926 lncRNA downstream 2043341 25475305 ~ 25476980 (-) False XLOC_004150
TCONS_00008800 lncRNA upstream 5928 27543578 ~ 27625465 (-) False XLOC_004169
TCONS_00007969 lncRNA upstream 54993 27592643 ~ 27625125 (-) False XLOC_004169
TCONS_00008801 lncRNA upstream 54993 27592643 ~ 27625455 (-) True XLOC_004169
TCONS_00008473 lncRNA upstream 168320 27705970 ~ 27706600 (-) False XLOC_004171
TCONS_00007976 lncRNA upstream 246108 27783758 ~ 27806767 (-) True XLOC_004173
TCONS_00007961 mRNA downstream 19294 27486584 ~ 27501027 (-) True XLOC_004166
TCONS_00007958 mRNA downstream 462749 26704181 ~ 27057572 (-) False XLOC_004164
TCONS_00007959 mRNA downstream 687636 26707262 ~ 26832685 (-) True XLOC_004164
TCONS_00007957 mRNA downstream 818710 26685982 ~ 26701611 (-) True XLOC_004163
TCONS_00007956 mRNA downstream 853820 26662624 ~ 26666501 (-) True XLOC_004162
TCONS_00007970 mRNA upstream 106874 27644524 ~ 27702778 (-) False XLOC_004170
TCONS_00007971 mRNA upstream 109025 27646675 ~ 27702835 (-) True XLOC_004170
TCONS_00007972 mRNA upstream 167380 27705030 ~ 27739049 (-) False XLOC_004171
TCONS_00007973 mRNA upstream 168929 27706579 ~ 27738489 (-) False XLOC_004171
TCONS_00007975 mRNA upstream 207968 27745618 ~ 27778831 (-) True XLOC_004172
TCONS_00007964 other downstream 17001 27503232 ~ 27503320 (-) True XLOC_004167
TCONS_00007963 other downstream 17189 27503017 ~ 27503132 (-) False XLOC_004167
TCONS_00007960 other downstream 771892 26748292 ~ 26748429 (-) True XLOC_004165
TCONS_00007954 other downstream 943112 26569531 ~ 26577209 (-) True XLOC_004161
TCONS_00007950 other downstream 1144803 26373998 ~ 26375518 (-) True XLOC_004160
TCONS_00007974 other upstream 175814 27713464 ~ 27719269 (-) True XLOC_004171
TCONS_00007992 other upstream 540498 28078148 ~ 28086924 (-) False XLOC_004178
TCONS_00008006 other upstream 1053238 28590888 ~ 28595428 (-) True XLOC_004184
TCONS_00008022 other upstream 2115040 29652690 ~ 29657852 (-) False XLOC_004191
TCONS_00008030 other upstream 2272047 29809697 ~ 29816202 (-) False XLOC_004195

Expression Profile

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