RNA id: TCONS_00008800


Basic Information

Item Value
RNA id TCONS_00008800
length 1790
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id XLOC_004169
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 27543578 ~ 27625465 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCATCATCACCAGTGACAGTCAGGCTGCACTTGACTCGCTTATCCCGCCCACACGCGCTGTATCTGCCGCTTTAATCAGGAAAACATCCGCGGGCGTTTGTGCAGCGGAAATGGACCGTGACCGCTGATGGCGGGAAGATGGATAAGGGCGAATCGTCACCCATTGATGTTATCGCGGCCAGCGTGAAGGGCTGAGCCGCTAATTACCGTCTGCGGTGGTCAAACACCCCATGACAACAACACCTGTAGACACTCCGAACATCTGCCCTCTAGTGCCGAGTAAACATGCTGCCGTTACCGTCTGAGAGACCATGTGCTGGCGGTCATAAACACTGCCTGGGGCTATCTGTCACAGTACATACTCCTGTTAATATTTCCTAAGGTGCGTGGCGTGCGCTGGAAACACACTCATGAGCTTATTCAAGGCAAAGTAAAGCTCTCATCTGGGATTGGTAAGAGTCTCTCCAAGCACCCCGAAGACTTCCAGCTCATTCTTGATTGCACATGGCAGCCTCTGACCTGCACCGAAGGCACCCGCTGCCATGGAAGATTGATGATTATCGATGCAGAAACCCTTTGCTAATTCAGCGTACGAGCTCCAGGATCGAGTTTACCCCGAAGATGGAGGTCCAGCGGAAGATGATGGGATGATGAGCCCACCTGTAGACCCGCGGCACCGGACAGAAGCGCAGAGCTTAGCGGCGCCCCGAGCGAGCAGGACAGAGGAGACACCGGAAACTTCAGGATACCCGTCTGGTCTGCCTTCAGAACTGGAATGAAATAAGAGTGTGTGTTAGCCATGATAAATCACTGATAAAAAGCGTGGATGGATCCATGAAGTGCATATATGATAGGTTGATTTAAATCGGCCTCTAAAATAATATTGGATAgactacactttattttaagctgATTTTATGTGTAATCACAAAAGTAAATAGTTTAATATTAAGTAGGCTAACCACATGTAAATTAGGTCTAACATTTGCTATTTGCAAATATATTACATAGTCTACTATTCGTTACAATTGAGTCGCATAATACTAAGGCTACAAAATATTTTcgtaaaaaaatcttaaagactTTTAAACAAACTGATGTTTCTTTGAATGAAAATCTTAgattaatttgtcattaaatattagcctatttttgatacattatttttaaaggtCAGTGTCGTATTTAACTGCATAAGCTATGTTGCGATAATGTAAAATTGGAGGGAAACattttttgcaacaatttaataaatatttttctgttCTGTAGGGTACAGTTTTCTTGTTCTgaataatcttatttttaaagTTAACCAATTGCCTTAAACTTGCTAAAAATAGTGACACATTGGCACTTATCCTTatcaatttatattatatttattcgattttgttgtatttattttagattttagaatTTTGCACCAAAAAGCATAGTGTTATTTCCAAGAATATCACCCGAAAAGAAGGCATGAATTGACGCAGCAGGCCTGAACTGAACGTGCATTTGCAATTTTCTCAAGCTTGCTAATTCAAATGCATTGCATATTTTTTGGTCTGATATCTGATTTGTTTTGTATTGGTCAGCAGAGACAATGTAATCTTTTCTTTCTGGGTATGCAAATAGAGAGGTTATGCGATTTGAATGTCCTCTGTATTAGGAGAAGGTTAAGGTTAAGAGATCGCCTGTCCCGGATCTCAAAATATCATCTGACGGAAAGGTCACGGAAGGCTACTTACCTAAGTGGTTATGGTAAGGTCTGGCGGACAAAAGGGCATGCACTCCAA

Function

GO:

id name namespace
GO:0048477 oogenesis biological_process
GO:1905516 positive regulation of fertilization biological_process
GO:0009566 fertilization biological_process
GO:0035803 egg coat formation biological_process
GO:0043900 regulation of multi-organism process biological_process
GO:0043902 positive regulation of multi-organism process biological_process
GO:0035036 sperm-egg recognition biological_process
GO:0080154 regulation of fertilization biological_process
GO:0007281 germ cell development biological_process
GO:2000241 regulation of reproductive process biological_process
GO:2000243 positive regulation of reproductive process biological_process
GO:0007292 female gamete generation biological_process
GO:0007338 single fertilization biological_process
GO:0007339 binding of sperm to zona pellucida biological_process
GO:0007340 acrosome reaction biological_process
GO:0009988 cell-cell recognition biological_process
GO:2000344 positive regulation of acrosome reaction biological_process
GO:0060046 regulation of acrosome reaction biological_process
GO:0012505 endomembrane system cellular_component
GO:0035804 structural constituent of egg coat molecular_function
GO:0032190 acrosin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007965 lncRNA downstream 35605 27502205 ~ 27507973 (-) False XLOC_004167
TCONS_00007962 lncRNA downstream 40446 27502509 ~ 27503132 (-) False XLOC_004167
TCONS_00008799 lncRNA downstream 877083 26619434 ~ 26666495 (-) False XLOC_004162
TCONS_00008798 lncRNA downstream 2066598 25475305 ~ 25476980 (-) False XLOC_004150
TCONS_00007926 lncRNA downstream 2066598 25475305 ~ 25476980 (-) False XLOC_004150
TCONS_00008473 lncRNA upstream 80505 27705970 ~ 27706600 (-) False XLOC_004171
TCONS_00007976 lncRNA upstream 158293 27783758 ~ 27806767 (-) True XLOC_004173
TCONS_00008474 lncRNA upstream 175394 27800859 ~ 27809715 (-) True XLOC_004174
TCONS_00007985 lncRNA upstream 203765 27829230 ~ 27830335 (-) False XLOC_004176
TCONS_00007993 lncRNA upstream 453178 28078643 ~ 28079691 (-) False XLOC_004178
TCONS_00007966 mRNA downstream 5917 27511277 ~ 27537661 (-) False XLOC_004168
TCONS_00007967 mRNA downstream 5928 27520321 ~ 27537650 (-) False XLOC_004168
TCONS_00007968 mRNA downstream 5985 27521513 ~ 27537593 (-) True XLOC_004168
TCONS_00007961 mRNA downstream 42551 27486584 ~ 27501027 (-) True XLOC_004166
TCONS_00007958 mRNA downstream 486006 26704181 ~ 27057572 (-) False XLOC_004164
TCONS_00007970 mRNA upstream 19059 27644524 ~ 27702778 (-) False XLOC_004170
TCONS_00007971 mRNA upstream 21210 27646675 ~ 27702835 (-) True XLOC_004170
TCONS_00007972 mRNA upstream 79565 27705030 ~ 27739049 (-) False XLOC_004171
TCONS_00007973 mRNA upstream 81114 27706579 ~ 27738489 (-) False XLOC_004171
TCONS_00007975 mRNA upstream 120153 27745618 ~ 27778831 (-) True XLOC_004172
TCONS_00007964 other downstream 40258 27503232 ~ 27503320 (-) True XLOC_004167
TCONS_00007963 other downstream 40446 27503017 ~ 27503132 (-) False XLOC_004167
TCONS_00007960 other downstream 795149 26748292 ~ 26748429 (-) True XLOC_004165
TCONS_00007954 other downstream 966369 26569531 ~ 26577209 (-) True XLOC_004161
TCONS_00007950 other downstream 1168060 26373998 ~ 26375518 (-) True XLOC_004160
TCONS_00007974 other upstream 87999 27713464 ~ 27719269 (-) True XLOC_004171
TCONS_00007992 other upstream 452683 28078148 ~ 28086924 (-) False XLOC_004178
TCONS_00008006 other upstream 965423 28590888 ~ 28595428 (-) True XLOC_004184
TCONS_00008022 other upstream 2027225 29652690 ~ 29657852 (-) False XLOC_004191
TCONS_00008030 other upstream 2184232 29809697 ~ 29816202 (-) False XLOC_004195

Expression Profile

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