RNA id: TCONS_00007973


Basic Information

Item Value
RNA id TCONS_00007973
length 3042
RNA type mRNA
GC content 0.53
exon number 19
gene id XLOC_004171
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 27705030 ~ 27739049 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atGGGTGTGCAGGGTTTCCAGGAATACATTGAGAAGCATTGCCCCAACGCCGTGGTGCCGGTGGAGCTCCAGAAGCTCGCCCGGGGGAGTCTGGTCGGCGGCGGCCGGCAGAGACCTCCTCAAACGCCGCTCCGGCTGCTGGTGGACGCCGAGAACTGTCTTCACCGGCTTTACGGCGGCTTTTACACCGACTGGGTGAGCGGAGGCCAGTGGAACCATATGCTCGGGTACCTCGCCGCCCTTGCCAAAGCCTGTTTCAACGGCAACATCGAGCTGCTAGTGTGCTTCAATGGCGCCCTGGAGAAAGGCCGTCTCCACGAGTGGGTCAAGCGACAGGTGAACGAGAGGCAGACCGCCCAGCAGATTGTCAGTCACGTCCAGAACAAGGGAACACCGCCGCCCAAGGTCTGGTTTCTGCCCCCGGTGTGCATGGCCCACTGCATCCGCCTGGCGCTCCTCAGGTTCCACATCGGGGTTGTCCAGACCATCGAGGATCATCACCAGGAAGTGATTGCCTTATTTCGAGAGAACGGCTTCCATGGTCTGGTTGCCTATGATTCGGATTACGCCCTGTGCAACATCCCATATTACTTCAGTGCCCATGCCCTCAAACTCAGCCGCAACGGCAAAAGCCTCACCACCAGCCAATACCTGATGCACGAAGTTGCCAAGCAGCTTAATCTCAATCCAAATCGTTTCGTCATTTTTGCTTCACTTTTAGGTAATCACATACTGCCTGATGAAGACTTGGCTGCCTTTCACTGGAGTTTACTTGGTCCTGAGCATCCTTTAGCATCCTTGAAGGTTCGTGCCCATCAGCTCGTTCTTCCTCCATGTGACGTCGTCATTAGAGCTGTGGCAGATTATGTCCGAAACCTGCAAGATGTCCACGATCTGGAAGCTATTGCTAAAGACATATTCAAGCATTCGCAGTCCAGAACCGATGACAAAGTTTTCCGTTTAAAGAAAGCAGTGGATTATTACAGCACCGCCAGCAAGCCTCCTCACTTCCCCCCCTATTTAGGTGAGATTGTCAATATGTTTGATTTTCCTCCTCTCCAACATTTTTCATCGCTCTTAGTACAAgatGCGGAGCAGTCTAGTAAAGGGCTCTTAGAACAGAACAGCTACAGCAACATTCCTAATGACAGAAAGCAGCACACTCCGCTCTACGAAAGACTTGACCCAGCCTTCTGCACCACCTCGTCCACATCCTCAGAGAATGAGGAAAACACAGGCTCCACTGCCAACCATGTAAGTGACCATAAGCGATGGGACAAACAGAAGAACCAGATGGACAACATCCCAGAAGGAGACCATGTGGACCAAAATGATTCTGATCCTTCTGCGACCTCTCCTGTGAACCAAGGCCTGGAGGGCAAAGGTCATGTCGGGGTCAACGTCCAGATTCCATCCCTGCTTTCAATGCCAACAAGAAACCACATGGACATCACCACTCCTCCTTTACCAGTGGTGGCGCCAGAGGTGCTGCGGGTCGCTGAGCACAGACACAAAAAGGGCCTCATGTACCCATACATCTACCACGTTCTTACCAAGggTGAGATTAAATTATCGGTCACCATTGAGGATGAAGCTAATAAAGACCTGCCCTCTGCGGTACAGCTTTACCGGCCTATTCGTCAGTATGTTTACGGGGTGCTCTTCAGCCTGGCCGAGGCCAAAAAGAGGGCCGAGAGACTGGCCATGAGGAGAAATTGTCTCCCTGAATATCCAGCGGTAATCATAAAAGAATGGGCTGCTTACAAAGGCAAATCACCACACACCCCTGAACTGGTGGAAGCTCTACCTTTCCGAGAGTGGACCTGCCCAAACCTGAAGAAACTCTGGCTGGGCAAAGCAGTGGAGGACAAGAACCGCAGGATGAGGGCTTTTCTGGCCTGCATGAGGTCTGACACTCCAGCAATGCTGAACCCTGCCAACGTCCCCACACCTCTCATGGTGCTGTGCTGCGTTCTGCGGTTTATGTTACAATGGCCAGGAGTAAGAATTTTGCGTCGTAACGAACTTGACGCTTTCCTAGCTCAAGCACTTTCTCCTAAACTTTATGAGCCTGACCAGCTGCAGGACCTGAAGATTGATAACCTGGATCCACGTGGCGTTCAGCTGGCTGCTCTTTTTATGAGCGGCGTGGATATGGCGCTGTTTGCCAATGATGTGTGCGGGCAGCCTATTCCATGGGAACACTGCTGTCCGTGGATGTATTTTGATGGAAAGCTGCTACAAAGTAAACTCAACCGGGCCAACAGGGACAAGGCCCCGCTTATTGACCTCTGCGATGGCCAGACTGAACTAGTTGCCAAGGTGGAGAAGATGCGTCAGAGTATTCTGGAGGGTCTGAACTTCTCTCGCCCACCACAGCCCCTTGCCTTCCCTCCGCCACCTCCACATGCAATGCCTTTCTATCCGTCAAACAGCACCTTCTACCCTCCGCCGCCTCTGCCCCCGATGCAGGGGAGAGGCAGAGGCATGCCTGGACTTCAGGCCATTCCATCACAGGGTGGTAAGCTTGAGATTGCAGGCACAGTGGTGGGTCAGTGGGCTGGTAGTCGTCGTGGCAGAGGAAGAGCCCCATTTCCCATACAAGTGGTGTCAGTTGGTGGACCAACCAGAGGTCGTCCAAGAGGTGTGATTTCTACTCCTGTCATAAGGACCTTTGGACGAGGAACCAGATACCTTAGTAGAGGGTTCAAGAGTCAGGGATCATTCCAGagcaagcctGCATATGCTGCCTCAACCTATGAAGTGATAAAAGACCGAAAGAAGCCCAAGTTGGCGACCGACGCACCACATCTGCCCTCAGATCACTCCACAGTGGCAGAAAACGGCTTGGCGGAGGGCAAAGATGCAGACCAGCTCATAGGGAACCAAGGGGAAAGCAGGGCTCCAAACCAACCTGAAAGTGCCTTTAGCAACGAATCTAAAATGTGCAATACTAATCCTCATTTAAATGCACTAAATGAAGATGGCGAGGGCCACAGAGATGAAGCTCTGAGCGTCGCCGTCTTAAAAGCAGAAGAGTAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005634 nucleus cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110131-10 Orthologous to human FAM120A (family with sequence similarity 120A).

Ensembl:

ensembl_id ENSDART00000181612

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008800 lncRNA downstream 81114 27543578 ~ 27625465 (-) False XLOC_004169
TCONS_00008801 lncRNA downstream 81124 27592643 ~ 27625455 (-) True XLOC_004169
TCONS_00007969 lncRNA downstream 81454 27592643 ~ 27625125 (-) False XLOC_004169
TCONS_00007965 lncRNA downstream 198606 27502205 ~ 27507973 (-) False XLOC_004167
TCONS_00007962 lncRNA downstream 203447 27502509 ~ 27503132 (-) False XLOC_004167
TCONS_00007976 lncRNA upstream 45269 27783758 ~ 27806767 (-) True XLOC_004173
TCONS_00008474 lncRNA upstream 62370 27800859 ~ 27809715 (-) True XLOC_004174
TCONS_00007985 lncRNA upstream 90741 27829230 ~ 27830335 (-) False XLOC_004176
TCONS_00007993 lncRNA upstream 340154 28078643 ~ 28079691 (-) False XLOC_004178
TCONS_00007994 lncRNA upstream 340154 28078643 ~ 28079704 (-) True XLOC_004178
TCONS_00007971 mRNA downstream 3744 27646675 ~ 27702835 (-) True XLOC_004170
TCONS_00007970 mRNA downstream 3801 27644524 ~ 27702778 (-) False XLOC_004170
TCONS_00007966 mRNA downstream 168918 27511277 ~ 27537661 (-) False XLOC_004168
TCONS_00007975 mRNA upstream 7129 27745618 ~ 27778831 (-) True XLOC_004172
TCONS_00007977 mRNA upstream 78812 27817301 ~ 27827533 (-) False XLOC_004175
TCONS_00007978 mRNA upstream 79587 27818076 ~ 27827442 (-) False XLOC_004175
TCONS_00007979 mRNA upstream 82110 27820599 ~ 27827528 (-) False XLOC_004175
TCONS_00007980 mRNA upstream 82135 27820624 ~ 27827472 (-) False XLOC_004175
TCONS_00007964 other downstream 203259 27503232 ~ 27503320 (-) True XLOC_004167
TCONS_00007963 other downstream 203447 27503017 ~ 27503132 (-) False XLOC_004167
TCONS_00007960 other downstream 958150 26748292 ~ 26748429 (-) True XLOC_004165
TCONS_00007954 other downstream 1129370 26569531 ~ 26577209 (-) True XLOC_004161
TCONS_00007950 other downstream 1331061 26373998 ~ 26375518 (-) True XLOC_004160
TCONS_00007992 other upstream 339659 28078148 ~ 28086924 (-) False XLOC_004178
TCONS_00008006 other upstream 852399 28590888 ~ 28595428 (-) True XLOC_004184
TCONS_00008022 other upstream 1914201 29652690 ~ 29657852 (-) False XLOC_004191
TCONS_00008030 other upstream 2071208 29809697 ~ 29816202 (-) False XLOC_004195
TCONS_00008033 other upstream 2157883 29896372 ~ 29909625 (-) False XLOC_004196

Expression Profile

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