RNA id: TCONS_00007976


Basic Information

Item Value
RNA id TCONS_00007976
length 750
lncRNA type lincRNA
GC content 0.44
exon number 7
gene id XLOC_004173
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 27783758 ~ 27806767 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTAGAACGCGTTCCAATGGAATACTTTAAGCTGTGCAGCTCAGataatttttttgttggtttGTAGAAGTGGCGGTTGGTCGATATTTCACAACGGATAGCAATTGTTTTAtcaaaatgtcttgttttctCTTCAGACGAAAGAACCCCATGaaggaaacacttgaggTTGATTTAGAGATGGAGGAGAAAAAGAGGCAGAAGGAGGAGAAAAGGAAGGAGAAAGAggagaaaaagaggaagaaagaggagagaaagaagaaaaggtgCCGGATCGGCTCCTTTTTTAAAGCGTTGTTCTGCTTCACTCTGGATgtggaggaggaggaaaagaagGAAAATGAGAACATAATGGTggtggaggtggaggaggagaaaAATTCAGATTCAAAATCATCCTCCATTCCAGCAGACCAAGCCACTGATGaTGATCAAGAGGAGATCAtgcaggaggaagaggagaaagTTGAGGAAGAGGAGGTGAAAATGGtggagaaaaagaaaaggaagacTAGACGAGGGAGGAGAGGAAGGAACAAAAAGAAAGAGGAGGCAATGgaggaggaggacaatAGAATTGAGGAAGAAGAGGAGATGAAGGAGGCAATGGTAGAGGAGGAGAAGAAAACTACAATgaaagagaaggaggaggaggaaatgGATACAACTGAGATGGTGGAGAAGAAGATGGCAGAGGTGAACaccgaggaggaggaggaggacaatAGAATTGAGGAAGAAGAGGAGATGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000173096

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008473 lncRNA downstream 77158 27705970 ~ 27706600 (-) False XLOC_004171
TCONS_00008800 lncRNA downstream 158293 27543578 ~ 27625465 (-) False XLOC_004169
TCONS_00008801 lncRNA downstream 158303 27592643 ~ 27625455 (-) True XLOC_004169
TCONS_00007969 lncRNA downstream 158633 27592643 ~ 27625125 (-) False XLOC_004169
TCONS_00007965 lncRNA downstream 275785 27502205 ~ 27507973 (-) False XLOC_004167
TCONS_00007985 lncRNA upstream 22463 27829230 ~ 27830335 (-) False XLOC_004176
TCONS_00007993 lncRNA upstream 271876 28078643 ~ 28079691 (-) False XLOC_004178
TCONS_00007994 lncRNA upstream 271876 28078643 ~ 28079704 (-) True XLOC_004178
TCONS_00008802 lncRNA upstream 320490 28127257 ~ 28390101 (-) False XLOC_004179
TCONS_00008803 lncRNA upstream 390190 28196957 ~ 28200504 (-) True XLOC_004180
TCONS_00007975 mRNA downstream 4927 27745618 ~ 27778831 (-) True XLOC_004172
TCONS_00007972 mRNA downstream 44709 27705030 ~ 27739049 (-) False XLOC_004171
TCONS_00007973 mRNA downstream 45269 27706579 ~ 27738489 (-) False XLOC_004171
TCONS_00007971 mRNA downstream 80923 27646675 ~ 27702835 (-) True XLOC_004170
TCONS_00007970 mRNA downstream 80980 27644524 ~ 27702778 (-) False XLOC_004170
TCONS_00007977 mRNA upstream 10534 27817301 ~ 27827533 (-) False XLOC_004175
TCONS_00007978 mRNA upstream 11309 27818076 ~ 27827442 (-) False XLOC_004175
TCONS_00007979 mRNA upstream 13832 27820599 ~ 27827528 (-) False XLOC_004175
TCONS_00007980 mRNA upstream 13857 27820624 ~ 27827472 (-) False XLOC_004175
TCONS_00007981 mRNA upstream 14262 27821029 ~ 27827467 (-) True XLOC_004175
TCONS_00007974 other downstream 64489 27713464 ~ 27719269 (-) True XLOC_004171
TCONS_00007964 other downstream 280438 27503232 ~ 27503320 (-) True XLOC_004167
TCONS_00007963 other downstream 280626 27503017 ~ 27503132 (-) False XLOC_004167
TCONS_00007960 other downstream 1035329 26748292 ~ 26748429 (-) True XLOC_004165
TCONS_00007954 other downstream 1206549 26569531 ~ 26577209 (-) True XLOC_004161
TCONS_00007992 other upstream 271381 28078148 ~ 28086924 (-) False XLOC_004178
TCONS_00008006 other upstream 784121 28590888 ~ 28595428 (-) True XLOC_004184
TCONS_00008022 other upstream 1845923 29652690 ~ 29657852 (-) False XLOC_004191
TCONS_00008030 other upstream 2002930 29809697 ~ 29816202 (-) False XLOC_004195
TCONS_00008033 other upstream 2089605 29896372 ~ 29909625 (-) False XLOC_004196

Expression Profile

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