RNA id: XM_026920259.2


Basic Information

Item Value
RNA id XM_026920259.2
length 2130
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC113530359
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 8620982 ~ 8627025 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCAGTGTCATTTCGACAGGGCGTGAGGAAAGTAAGGGCAGGTGAGAGTGGAGATGAGGCAGTCACCATGCAGCGAGAGGGCAGTGCACTTCTGTTCCACCTGTAGCACCACTGACTCCAGACTTGAGAATGCGAACACTCTCTAGAAGCAACTAAGGAAAGTAAAAACAAGACGGGAACACAAACAGactTGTTCTGCGTACTTTGCTGAAGCTGCTCAGCTGGTCGAGCGTACACCGTTACAGGATCTCGCCGTTCTGCACGTACACAGGACCATAAATCTAAGccaATCAGACATAAGGGAGGTGTGAATGATAGGATGTACCTGTAAGATGGACATGGGAGCGACTGTGTGGCACACCCAGATGACAGTGGATGCTGACGTGGAGAAAGGTCCTGAGCTGCAGTGCTCCATCTGCTTCACCATGTATGACAATATCTTCAAAACGCCCAAACAGCTGGATTGCACGCATACGTTCTGTCTGGAGTGCCTCTCACGCCTCGTGGCCATCTCCATGGCCCCTCAGGAGAGTAAAATCTCATGTCCCTTCTGCCGACACCTTACGGCCATCCCTAAAAACGGCCCGCCGGCTCTGACCACCAGTCGCGAGGTTCTGTGTCGTCTTCCCAGGCACCAGCAGAATGAGGAGCCCGTGTGGCTCGAGGGGGACAAGCTGTGCTACAAGCGGCCCCTTAAGACAGGCATGCCAGCTTTCTGCATCTGCATTGACATTGGTGCCAGTGGGCATGGTGCAGGAGCTCCACCTCAGACGGGGTTCAGGGCGAGCCTGTTGGAAAGACTCACTAACTGGAAGAAGCTTCTGCTGTTTATTGTAATCatggtgctggtggtggtgatTGTGTTGTGGCCGCTGCAGTGTATCATCACCACGGGATCGATGCGGTGCGTGCCTCGCACCCCACAGCCCAACACCAGCACCACTGCTCCGCGCACAATGAGACACCCATAACTGACGCACAAACAAACTGTTGATCTCACCCTCCTGAGAACTGTACACTCAGCGATGATGGGCAagacacaaaataaacattattattattattattagaaactGAGAGTGGGCTTGAAGCCTGAGTCCAAAAACATCTGTGTGACATCGAATCAGAGACTCATTAGTGTTCTTTTTAGCTGAAAACACTGTCGTATATGCTGgccattcattcagtcattttcatcagccactttatcttggtcaggatTGTGGTGGATCCTGAGCCTATTCCTGGAACACTGAACACGACGTGGGAATACTGGATGGTATGCTAGTCCATtgccagcaccacacacacacacacacacacacacacacctaggggcaatttagcatcaCCCATCCACCTACTGTGCTGTTTTGGGAGGTAGGAAGACATCAGAGAACCAAGAGGAAACCCAGACAGGCACAGGCACAACATgaaacactccacacagacagtaacccgagctcaggatcaaaccctggagcCGTGAAGCGGCGACACTTCCTGCTGCGCCGCTGTATGCCTAGTGTAACGCAAATATCTTCATCATAATCAGGAGAAAATCACTGGTTAAATATTTGATTGGTATTAGTTTTCTGAGACCCGTGTTCATCTGCAGAAAGCACGAGGCTGGAGTCGGATATTATAGGACTAATGAGGTGATGAGAGGTAGGAACCTGTGGAAAGGCACTAGACTTGAACAGACGAGACTAATGTGATATAAACACATCTAATACAATGTTCATCTTCAGCACTTTCTAATAGTATTAGCATTTCTCCATGTCTAAATCATAATCTGTGATTTTAGAAATGAAGTTTTTTCCAGATCCAAtctcagaggttttttttaatctgatattaaaaaaattagaaacgGTTGATCTCAGAACAGTATTCAAAGTGGTTTTTTGCAGTGGATATGAGACAGCTCATACCAAAATCCATTAAAAGGTTATATTAACTTTTTAATAACTGCACTACAAATATCCTTCTGCAGTTTTTCATATATACACTAACATTTCTATAGctgtgtataattttatatgcATTGTATATGGTGTATTTGATCACACTGTATTATGGACTACATATTTTTGGTTTACAAAAGAGTAAATGCTGACTAAACACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579753.1 lncRNA upstream 20864 8597737 ~ 8600118 (+) True LOC117599296
TU297579 lncRNA upstream 111335 8509434 ~ 8509647 (+) True G251424
TU297572 lncRNA upstream 137425 8483292 ~ 8483557 (+) True G251418
TU297571 lncRNA upstream 137761 8482988 ~ 8483221 (+) True G251417
TU297554 lncRNA upstream 159173 8403341 ~ 8461809 (+) True G251400
TU297629 lncRNA downstream 2910 8629935 ~ 8633785 (+) True G251463
TU297627 lncRNA downstream 24576 8651601 ~ 8672239 (+) True G251462
TU297967 lncRNA downstream 412170 9039195 ~ 9039398 (+) True G251747
TU297980 lncRNA downstream 447331 9074356 ~ 9074629 (+) True G251760
TU298010 lncRNA downstream 503926 9130951 ~ 9223205 (+) True G251783
XM_026921082.2 mRNA upstream 68589 8533132 ~ 8552393 (+) True arhgef19
XM_026921083.2 mRNA upstream 68589 8533954 ~ 8552393 (+) False arhgef19
XM_026920299.2 mRNA upstream 89311 8513140 ~ 8531671 (+) True ano11
XM_026920813.2 mRNA upstream 111806 8493582 ~ 8509176 (+) True plekhm2
XM_026920111.2 mRNA upstream 130175 8483668 ~ 8490807 (+) True ddost
XM_026920937.2 mRNA downstream 330369 8957394 ~ 8959195 (+) False her9
XM_026920936.2 mRNA downstream 330370 8957395 ~ 8959195 (+) True her9
XM_026920737.2 mRNA downstream 379717 9006742 ~ 9021145 (+) True perm1
XM_026921233.2 mRNA downstream 441680 9068705 ~ 9107223 (+) False noc2l
XM_034312117.1 mRNA downstream 441841 9068866 ~ 9107223 (+) True noc2l
TU297540 other upstream 262882 8352789 ~ 8358100 (+) False spen
XR_004579705.1 other upstream 283483 8312773 ~ 8337499 (+) False atp13a2
XR_004579706.1 other upstream 283483 8313817 ~ 8337499 (+) False atp13a2
TU297455 other upstream 380215 8240018 ~ 8240767 (+) False si:ch211-197l9.2
XR_003403162.2 other upstream 1354379 7261228 ~ 7266603 (+) False tardbpl
XR_004579736.1 other downstream 1665581 10292606 ~ 10339205 (+) False kcnab2b
TU299368 other downstream 2221826 10848851 ~ 10851345 (+) False b4galt3
XR_004579720.1 other downstream 2245004 10872029 ~ 10912533 (+) False atp2b3b
XR_003403205.1 other downstream 2369584 10996609 ~ 10996743 (+) True LOC113530991
TU299671 other downstream 2604404 11231429 ~ 11237362 (+) True oard1

Expression Profile