RNA id: TU298026


Basic Information

Item Value
RNA id TU298026
length 2039
lncRNA type inter_gene
GC content 0.44
exon number 6
gene id G251799
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 9358262 ~ 9401392 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGATTCACACCATATGCGAGTTGATCAAAACATGCCGCTGTTTGCTGATAAATGTCTAAGGGAGGCAGTAAGGTCGTCCCCTGTCTTTgtctcctttctgtctctctttctttctcagcagCGCAGGCTGGGGCAGGAGAGTAAACACAGATGCTGAGCAGCAAACTGAAGGACAGCCTTTTTATCAGCTATGACAGCCCTGGCTGCTGTAAGAATCAAACAAACAGTGCAAGCAAGTGTGTCACTTTAATAAAGTGCCAGAGTTAGAAACTAGgtaagaaagacagacacagagacacagataagaggagagagagAACAGCACCAAAATCATATCTAGTTTATGTGGAATCATTAGACAAAGTAGTTGGTCATTAGAACAAATACCATCAGATAATCAGGGTCAGGAGGATGCAGAGTGCTTTTACTTGAAAGCAAAACACatgcagtgtatatacagtgtaagcCAGTGAATAGCCCAGGCTGTAGAGTGCttcagatagtggcattgctcTGGAATGACAGCAGAGGTCAGTACAGACCTCTACAGCAGTCCCTGCACAGTGTATTTCTCAAGCTACCCTTGGTTTTGCAAGCTTAACACTGGTCATTGTGAAACATTTTGCAACAAATACCAGAAGTAAAAGACAGAACTGAGAATAGAAATGTTCAGTTGTTAATTGGTTcttacaatataaataaaatacaaggtCCTAAGCACAAGAGTATAAAGGAGTCATAAGGATCAGATGCCATGCTGGTGTtgctgtgctgtctgggtgtCTTGTTACTTGTTTCTCATGCATCACTGCTTCAGTCAGGAGGACATCTCTTATTACCAGACCCGCACCTAGGAGGATGTTGGGGGCGAAGCCACCTTCGTCTCCCACATTGGTGGCGTCTTTGCCGTATTTCTCCTTGATGACGTTCTTCAGGTTGTGGTAGACCTCAGCACCGATGCGCATGGCCTCTTTGAAGTTGCTTGCTCCAACAGGGAGGATCATGAACTCCTGCATGGCCAGCTTGTTGCCAGCGTGGGAGCCCCGTTGATAACGTTGAAGGCCTTGGGAATAGGCACTGGGAGGATGACCTCTGGATTTCCAGCAAGGTCAGCGATGTGGCGGTAGAGTGGGACGCCCTTCTCTGCAGCACCAGCCTTGCACACAGCCAGGGACACACCCAGGATGGCATTTGCACCAAATTTAGTTTGTTATCTGTACCATCCATATCAAGCATCAGCTTGTCAATCTTCTCCTGCTCCAAAACAGACACATCTACCTGGCTAACCAGGGCAGGTGCAATTGTTTTATTGATATGCTCAACAGCTTTAGAGACACCTGCAAGGAACAagcagaccatcactgacccgaGTGGAGGGGAACATGCAGAGTTGGCACGGTTAGACATTAGATCACAGGCCCCGAAGTTCTCCCCAATTATTTATTAGCATTCAGGTGAGGGAGCTTTAGCACACGTAGGAGAGTTTCAAATGTTTCTCAGGACTTCTGTGATCATCTGTTAGTTGCAAAAACAAACTCATGCTCTGGTACACACGGCTGAGATGACCCTTACTTCAGTTACggcacacactcatttaccTGGTTACATAAAGCTGGGGCCAAGaactcatttacatattttacagctCTTTTCACCCCTGAcagaggagaaggaaagtgTCAAAACAGGCAagatggaaaaacaaagaaataggCAGAGTACACAGTGACAGATCTACATTACTGAAGACCTGGAAGAACctattacagtaaataaatgatgGTTGGGTGGCTGAGGTGAAGCAGCCTACAATTATAAGCATATAAGCACAGTGCCAAACATTAGGCATTAATTAGGCAATAATTAATTGAAGGAAAGTAGTTTGTAGAAGAAAATTCTGCACCGATAGTCTATAAAGTTTGGTGGAaacatacatttaaatgtttagaCTCATGGTTTGGTCTGGGGACCCTCCAGGGGTAATAAGGATTTGTACAAGTTCTATGGGtggaaaatagaaataaaaaaaacatctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298031 lncRNA upstream 108999 9243314 ~ 9249263 (+) True G251803
TU298029 lncRNA upstream 119729 9233213 ~ 9238533 (+) True G251801
TU298009 lncRNA upstream 126345 9220942 ~ 9231917 (+) True G251782
TU298010 lncRNA upstream 135057 9130951 ~ 9223205 (+) True G251783
TU297980 lncRNA upstream 283633 9074356 ~ 9074629 (+) True G251760
TU298028 lncRNA downstream 2459 9403851 ~ 9406388 (+) True G251800
XR_004579723.1 lncRNA downstream 5115 9406507 ~ 9407698 (+) True LOC117599255
TU298189 lncRNA downstream 37168 9438560 ~ 9438796 (+) True G251921
TU298258 lncRNA downstream 140737 9542129 ~ 9543640 (+) True G251988
TU298391 lncRNA downstream 253490 9654882 ~ 9656393 (+) True G252102
XM_026921233.2 mRNA upstream 251039 9068705 ~ 9107223 (+) False noc2l
XM_034312117.1 mRNA upstream 251039 9068866 ~ 9107223 (+) True noc2l
XM_026920737.2 mRNA upstream 337117 9006742 ~ 9021145 (+) True perm1
XM_026920937.2 mRNA upstream 399067 8957394 ~ 8959195 (+) False her9
XM_026921091.2 mRNA downstream 10081 9411473 ~ 9417779 (+) True ca6
XM_026921378.2 mRNA downstream 68680 9470072 ~ 9489862 (+) True spsb1
XM_026921022.2 mRNA downstream 278210 9679602 ~ 9728769 (+) True phc2a
XM_034312059.1 mRNA downstream 278215 9679607 ~ 9728769 (+) False phc2a
XM_026921023.2 mRNA downstream 278215 9679607 ~ 9728769 (+) False phc2a
TU297603 other upstream 732400 8621005 ~ 8625862 (+) False LOC113530359
TU297540 other upstream 1000162 8352789 ~ 8358100 (+) False spen
XR_004579705.1 other upstream 1020763 8312773 ~ 8337499 (+) False atp13a2
XR_004579706.1 other upstream 1020763 8313817 ~ 8337499 (+) False atp13a2
TU297455 other upstream 1117495 8240018 ~ 8240767 (+) False si:ch211-197l9.2
XR_004579736.1 other downstream 891214 10292606 ~ 10339205 (+) False kcnab2b
TU299368 other downstream 1447459 10848851 ~ 10851345 (+) False b4galt3
XR_004579720.1 other downstream 1470637 10872029 ~ 10912533 (+) False atp2b3b
XR_003403205.1 other downstream 1595217 10996609 ~ 10996743 (+) True LOC113530991
TU299671 other downstream 1830037 11231429 ~ 11237362 (+) True oard1

Expression Profile