RNA id: TU298258


Basic Information

Item Value
RNA id TU298258
length 1489
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G251988
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 9542129 ~ 9543640 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gctcttttgttttgtttacattccTGTGGGCTTTTGTTTCTGCTGTAATCCTGTCATTGGTTGattaccctaatgtgttcacctgttctgtgtctcaTCTTCATTAGGTTGGTTATATAATATGTTATCACTTCCTCATTCCAAAGATTCTGAATGGAATCTTTCATAGCTTTTCATATTAGACTCACTGAATGTCATAGTGCATTAGACTGCACAACACTCACACATAGTTTACACATAGTAACATCTAGACAGCTCACATTATACCAGTGAATTTCCAGTAGGTGTGTGTCGAATGAAGTCTGTATGAATTTCTTCCTGTTCGCCTGGGCAAACAGATTGTGTACTGTCTCGCATTGTTTGAGTACACTGTGCTACTCCTCCATATGCAAACAGACCCTACTGCCTTGAAAACAAACACCTGAGAAATTCAACCTGGCAAAATAACAATATCACAATCTCGCTGGtagagaaaaggaaggaaatagagagagtgtgtgatgaaagGCTGATTAGTATTGCTCTATGGAGGGTTCTCATACCTCTCAGCTATCAAACAACACCCCGAAACAGCCAGCAGCGAGGCTTTATCAAAGACTAATAGTAAAACTCTGCACCATATGCTGTCCCTGATTCTCAGCTCAGGGGATCCTCCTTCAGCAAACACTGCCTGAGTCATGAACACTTGCTGCTTTAAAGTAATACAAAGCAAATACAAAGCTAAGAACACAACAATAAAAAGTGCTCCCGGATACAACTTCATGGTAACCATTACTTTATTGCTCTGTATAATTTtgcagactttaaaaaaaaagtgaaatgtcacaaaaaaaaaagtgcagcagAGATGCATGggatgaaatgtttttttaatcaacctGACTAATTAGAAATTGATCTTTAGCCTGCAGTGGTCAGACACTATTATAATTCAGTGTGCTCTCAGAtttttctgtcatgCATCAAAGGTTTACTTACGATCCCAGGCCTTTTCCAGTGTCCCACTGTCACGTGGACTGGACTTCTTGTGGCCATTCTGAAGTGATGTCCAGTGTCtcttagacaaaaaaaaatcctttacaTCCAGTCCAGACTAGTTCAGGTCCAGAAATGTTTTTCCTGGGCCTTCAACAGCACCCCCCTGTTTCCACCCGAGTGAGAAGAAAAGTCCAAAGTGAGAACCAGCAGAGTGTCCCATCACAGCAGTGTGAGAAAGCCTCTGATAGAGAGCACTGCACCGCTCTGTGGTGTGtactttgtatgtgtgtttgtgtgtatgagcatGAGGTTAGAGccagtatttcttttttcctctctccagaCTGGTGTGGGAATTGGCAAGGCAAGTCTTGCATTCCTTTCTCACAGAGCAGCTCTTtttgtactctctctctctgaggtaTAGAGGTGGAGCTGAGCCTCGGGTTATACTCCAACAAGCCTGCAAGGAGCCCACCCAATGGAGCTCTAATGCTCTGTGCCACACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298189 lncRNA upstream 103333 9438560 ~ 9438796 (+) True G251921
XR_004579723.1 lncRNA upstream 134431 9406507 ~ 9407698 (+) True LOC117599255
TU298028 lncRNA upstream 135741 9403851 ~ 9406388 (+) True G251800
TU298026 lncRNA upstream 140737 9358262 ~ 9401392 (+) True G251799
TU298031 lncRNA upstream 292866 9243314 ~ 9249263 (+) True G251803
TU298391 lncRNA downstream 111242 9654882 ~ 9656393 (+) True G252102
TU298408 lncRNA downstream 164455 9708095 ~ 9730055 (+) True G252116
XR_004579703.1 lncRNA downstream 400922 9944562 ~ 9946932 (+) True LOC117599238
TU298668 lncRNA downstream 455044 9998684 ~ 10001448 (+) True G252336
TU298760 lncRNA downstream 621068 10164708 ~ 10165255 (+) True G252389
XM_026921378.2 mRNA upstream 52267 9470072 ~ 9489862 (+) True spsb1
XM_026921091.2 mRNA upstream 124350 9411473 ~ 9417779 (+) True ca6
XM_026921233.2 mRNA upstream 434906 9068705 ~ 9107223 (+) False noc2l
XM_034312117.1 mRNA upstream 434906 9068866 ~ 9107223 (+) True noc2l
XM_026920737.2 mRNA upstream 520984 9006742 ~ 9021145 (+) True perm1
XM_026921022.2 mRNA downstream 135962 9679602 ~ 9728769 (+) True phc2a
XM_034312059.1 mRNA downstream 135967 9679607 ~ 9728769 (+) False phc2a
XM_026921023.2 mRNA downstream 135967 9679607 ~ 9728769 (+) False phc2a
XM_026921024.2 mRNA downstream 135967 9679607 ~ 9728769 (+) False phc2a
XM_026921026.2 mRNA downstream 178141 9721781 ~ 9728769 (+) False phc2a
TU297603 other upstream 916267 8621005 ~ 8625862 (+) False LOC113530359
TU297540 other upstream 1184029 8352789 ~ 8358100 (+) False spen
XR_004579705.1 other upstream 1204630 8312773 ~ 8337499 (+) False atp13a2
XR_004579706.1 other upstream 1204630 8313817 ~ 8337499 (+) False atp13a2
TU297455 other upstream 1301362 8240018 ~ 8240767 (+) False si:ch211-197l9.2
XR_004579736.1 other downstream 748966 10292606 ~ 10339205 (+) False kcnab2b
TU299368 other downstream 1305211 10848851 ~ 10851345 (+) False b4galt3
XR_004579720.1 other downstream 1328389 10872029 ~ 10912533 (+) False atp2b3b
XR_003403205.1 other downstream 1452969 10996609 ~ 10996743 (+) True LOC113530991
TU299671 other downstream 1687789 11231429 ~ 11237362 (+) True oard1

Expression Profile