RNA id: TU298530


Basic Information

Item Value
RNA id TU298530
length 1578
lncRNA type sense_over
GC content 0.37
exon number 3
gene id LOC117599234
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 9768247 ~ 9771563 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACAGGGTGGAGATGACAAAGGGCTGTAATTATCTTTGAAGTTGTGTTTTAAAAGGAACAGCAGAGGCACGGGATACAAGAACGTCAGAAGACAGTACATATAGCCCAGGGTTCAGCTGAAGATGAAGGTCTTGCCAGTCGTTCTACTGATTTTGGCCTTTGGCCTAATCTCAGATGCTGTGATTGTTCATgaaGGAgaattttctttctcactcGAATCAGTAAAAAAGGTTTGGGACATCCTGGCTAATGAAGAGTCAACCAAACAGACCAATCCCTTAAGCGTGTTCAGCGCTGTGACAGTGTGTGAAAACCCACTCCTTCCTGAGGAATTTCAGCCTCTGTGCCAAAGCAAAAATGCACAATTTCATTTCTCCAGACTTGCACTTCTCTCCGGGAAAAAGGATGTATGTGAGATCTGTGCATTTGCTGCTTGCACTGGTTGCTGAACATGACTCAGCATTATACTGATACTTCAAGATCTAAAATCTTACTCTTTTTAAATTccacttatttttattagtttgacAAATTCATTATGCATACTTGTATGTaatctgtctctgtgttgtAATCATTTTTATCTCCAATCACTATTTTAAAAGAACTTCAAATTCACCTGGATTAAAACTCTGTTATGATAGCTTTAAGATCTAACACTTTGTGGTAGAATTTATGTATAAGTTGTTTCCTATTTTCTATGTGTTACTTACTATCAGCATTTATTATATAGTACAAACCCAAggcaaaattaaatataatagaaATCTCACTAACTAGTCTTGATCATTGATATGCTGTGTCAAAGCATTTGAAAATGTGGTAATGTAAGTGTGAAAATTTTAGATACAACATATCTAAaggtatatacactcaccagacaATTTAAtaggctggtgagtgtatatacatttcgtcattcatgtatttatccaatcagccattcatgtggcagcagcacaatgcatgagaatggccagactggttagagCTAACAGAAAAGCTCTGGTAATGCACATAATCTCATTTCTACAACACtgataagcagaaaagcatctcagaacgcaaactacatcaaaccttgaagcagatgggctttaacagcagaagactacatcggGGAGGAATCcaagtgggcacaggctcaccgaaactgggcAGTTTTAAATTGCgtaaagaccaggcaatgtttttccaatcttcaactgtccagtttctgtcgttttgtttttcgcaccattctgtaagaattatattgttgtgtgtgaaaatcccaggagattaacaatttctgaaatactcaaaccagcccatctggcacaaccaaccatgccatggttaaagtcactaagttcacatttcacatttcaatttcacatttcacaatcCCTttaacatttccacattttgtggTGTTACAATCTGGAAATAAAAATGGTCTTAATTTGGTTTATACATCACCAATCctcacaaaatagcccataatattgtaGTGCGTAGGGACGTCTATAtgttttgaaaaatgatttacaaattaGACAAATTTTATTCAGATAAATAGGTGACTTCTgatggttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579742.1 lncRNA downstream 59444 9704915 ~ 9708803 (-) True LOC117599281
TU298233 lncRNA downstream 269946 9498090 ~ 9498301 (-) True G251963
TU298225 lncRNA downstream 278384 9488270 ~ 9489863 (-) True G251955
XR_004579745.1 lncRNA downstream 316079 9449297 ~ 9452168 (-) True LOC117599283
TU298192 lncRNA downstream 328611 9439347 ~ 9439636 (-) True G251924
TU298584 lncRNA upstream 75553 9847116 ~ 9849696 (-) True G252265
TU298642 lncRNA upstream 123721 9895284 ~ 9895525 (-) True G252311
TU298662 lncRNA upstream 145866 9917429 ~ 9920148 (-) True G252331
TU298869 lncRNA upstream 283314 10054877 ~ 10056083 (-) True G252479
XR_004579652.1 lncRNA upstream 408225 10179788 ~ 10181888 (-) True LOC117599207
XM_034312058.1 mRNA downstream 2393 9729374 ~ 9765854 (-) False eif4g3b
XM_026921020.2 mRNA downstream 2393 9729374 ~ 9765854 (-) False eif4g3b
XM_026921019.2 mRNA downstream 2393 9729374 ~ 9765854 (-) False eif4g3b
XM_026921018.2 mRNA downstream 2393 9729374 ~ 9765854 (-) False eif4g3b
XM_026921017.2 mRNA downstream 2393 9729374 ~ 9765854 (-) True eif4g3b
XM_026921235.2 mRNA upstream 2920 9774483 ~ 9780995 (-) True lactbl1a
XM_026920318.2 mRNA upstream 150615 9922178 ~ 9928130 (-) True dhrs3a
XM_026920349.2 mRNA upstream 157705 9929268 ~ 9942531 (-) True igsf21b
XM_034311733.1 mRNA upstream 173288 9944851 ~ 9982274 (-) True arhgef10lb
XM_026920345.2 mRNA upstream 173288 9944851 ~ 9976582 (-) False arhgef10lb
XR_003403155.2 other downstream 1189647 8566656 ~ 8578600 (-) False ttll10
TU296847 other downstream 2258500 7476274 ~ 7509747 (-) False ctnnbip1
TU296070 other downstream 3460484 6304844 ~ 6307763 (-) False rps26
XR_003404646.1 other downstream 4620115 5148053 ~ 5148132 (-) True LOC113545697
XR_003404648.2 other downstream 4620428 5147735 ~ 5147819 (-) True LOC113545699
TU298725 other upstream 257929 10029492 ~ 10029993 (-) True G252373
XR_003403171.2 other upstream 689131 10460694 ~ 10469534 (-) False usp21
TU299234 other upstream 864960 10636523 ~ 10638718 (-) False sinup
TU299470 other upstream 1242401 11013964 ~ 11015630 (-) False LOC113530950
trnae-uuc_4 other upstream 1487480 11259043 ~ 11259114 (-) True trnae-uuc_4

Expression Profile