RNA id: TU298725


Basic Information

Item Value
RNA id TU298725
length 350
RNA type TUCP
GC content 0.51
exon number 2
gene id G252373
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10029492 ~ 10029993 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCAGACCTCTCTACATCACCGACTCACTCTTGAACACCAGCCAGCCATCCATCATGAAAGATCTGCAAAAAAGGTGCAAGCTCATGGCCTTGGAGAGGAGATGCACTGATGGGGTGGAGCGCCTCAAGACCATCCTGGAGGCCCAGCTGCACAGTGGCATCTCTCACACAGACCTCTGGGACAAGACAGTCTCACTTTTTACCCCAAAGAAGACGCCAATCTTCCATGATGGTTATTCCAAGTACTCGAGAGAGACCCTGCGGCTCTTCCCTGCTCCAGATGAAGATGTGATCCCTCTCTGTTTTCAGCAGTGATGCACTTCACAATTgaaaaacagcagcaacaacaa

Function

GO:

id name namespace
GO:0008289 lipid binding molecular_function

KEGG:

id description
ko04975 Fat digestion and absorption
ko04979 Cholesterol metabolism
ko04977 Vitamin digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298662 lncRNA downstream 109344 9917429 ~ 9920148 (-) True G252331
TU298642 lncRNA downstream 133967 9895284 ~ 9895525 (-) True G252311
TU298584 lncRNA downstream 179796 9847116 ~ 9849696 (-) True G252265
TU298530 lncRNA downstream 257929 9768247 ~ 9771563 (-) True LOC117599234
XR_004579742.1 lncRNA downstream 320689 9704915 ~ 9708803 (-) True LOC117599281
TU298869 lncRNA upstream 24884 10054877 ~ 10056083 (-) True G252479
XR_004579652.1 lncRNA upstream 149795 10179788 ~ 10181888 (-) True LOC117599207
XR_004579740.1 lncRNA upstream 214048 10244041 ~ 10288684 (-) False LOC117599279
XR_004579738.1 lncRNA upstream 214048 10244041 ~ 10288238 (-) True LOC117599279
XR_004579737.1 lncRNA upstream 214048 10244041 ~ 10287807 (-) False LOC117599279
XM_026920958.2 mRNA downstream 6992 10017491 ~ 10022500 (-) True icmt
XM_026920893.2 mRNA downstream 26924 9998877 ~ 10002568 (-) True LOC113530673
XM_034311733.1 mRNA downstream 47218 9944851 ~ 9982274 (-) True arhgef10lb
XM_026920345.2 mRNA downstream 52910 9944851 ~ 9976582 (-) False arhgef10lb
XM_026920342.2 mRNA downstream 52910 9944851 ~ 9976582 (-) False arhgef10lb
XM_034312011.1 mRNA upstream 4280 10034273 ~ 10035819 (-) True LOC117599272
XM_026921191.2 mRNA upstream 8726 10038719 ~ 10040169 (-) True LOC113530835
XM_026921216.2 mRNA upstream 16192 10046185 ~ 10047365 (-) True LOC113530854
XM_026921035.2 mRNA upstream 19311 10049304 ~ 10050616 (-) True LOC113530745
XM_026920735.2 mRNA upstream 27531 10057524 ~ 10062745 (-) True LOC113530596
XR_003403155.2 other downstream 1450892 8566656 ~ 8578600 (-) False ttll10
TU296847 other downstream 2519745 7476274 ~ 7509747 (-) False ctnnbip1
TU296070 other downstream 3721729 6304844 ~ 6307763 (-) False rps26
XR_003404646.1 other downstream 4881360 5148053 ~ 5148132 (-) True LOC113545697
XR_003404648.2 other downstream 4881673 5147735 ~ 5147819 (-) True LOC113545699
XR_003403171.2 other upstream 430701 10460694 ~ 10469534 (-) False usp21
TU299234 other upstream 606530 10636523 ~ 10638718 (-) False sinup
TU299470 other upstream 983971 11013964 ~ 11015630 (-) False LOC113530950
trnae-uuc_4 other upstream 1229050 11259043 ~ 11259114 (-) True trnae-uuc_4
trnan-guu_24 other upstream 1243337 11273330 ~ 11273403 (-) True trnan-guu_24

Expression Profile