Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU298760 |
| length | 548 |
| lncRNA type | inter_gene |
| GC content | 0.44 |
| exon number | 1 |
| gene id | G252389 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047610.1 |
| NCBI id | CM018556.1 |
| chromosome length | 25111544 |
| location | 10164708 ~ 10165255 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0016641 | oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU298668 | lncRNA | upstream | 163260 | 9998684 ~ 10001448 (+) | True | G252336 |
| XR_004579703.1 | lncRNA | upstream | 217776 | 9944562 ~ 9946932 (+) | True | LOC117599238 |
| TU298408 | lncRNA | upstream | 434653 | 9708095 ~ 9730055 (+) | True | G252116 |
| TU298391 | lncRNA | upstream | 508315 | 9654882 ~ 9656393 (+) | True | G252102 |
| TU298258 | lncRNA | upstream | 621068 | 9542129 ~ 9543640 (+) | True | G251988 |
| TU298798 | lncRNA | downstream | 1294 | 10166549 ~ 10166791 (+) | True | G252422 |
| TU299103 | lncRNA | downstream | 375192 | 10540447 ~ 10540656 (+) | True | G252674 |
| TU299104 | lncRNA | downstream | 376015 | 10541270 ~ 10541479 (+) | True | G252675 |
| TU299087 | lncRNA | downstream | 455394 | 10620649 ~ 10623909 (+) | True | G252665 |
| TU299090 | lncRNA | downstream | 455394 | 10620649 ~ 10633419 (+) | False | G252665 |
| XM_026920573.2 | mRNA | upstream | 45 | 10152321 ~ 10164663 (+) | True | zgc:154075 |
| XM_026921034.2 | mRNA | upstream | 108613 | 10054823 ~ 10056095 (+) | True | her12 |
| XM_026921173.2 | mRNA | upstream | 121405 | 10041768 ~ 10043303 (+) | True | LOC113530826 |
| XM_026921160.2 | mRNA | upstream | 132006 | 10031320 ~ 10032702 (+) | True | LOC113530819 |
| XM_026920888.2 | mRNA | upstream | 148725 | 10003686 ~ 10015983 (+) | True | rnf207b |
| XM_026920105.2 | mRNA | downstream | 16237 | 10181492 ~ 10189088 (+) | True | LOC113530271 |
| XM_026921374.2 | mRNA | downstream | 35789 | 10201044 ~ 10245845 (+) | True | pax7b |
| XM_034312039.1 | mRNA | downstream | 35789 | 10201044 ~ 10245845 (+) | False | pax7b |
| XM_026921375.2 | mRNA | downstream | 35789 | 10201044 ~ 10245845 (+) | False | pax7b |
| XM_034312037.1 | mRNA | downstream | 35789 | 10201044 ~ 10245845 (+) | False | pax7b |
| TU297603 | other | upstream | 1538846 | 8621005 ~ 8625862 (+) | False | LOC113530359 |
| TU297540 | other | upstream | 1806608 | 8352789 ~ 8358100 (+) | False | spen |
| XR_004579705.1 | other | upstream | 1827209 | 8312773 ~ 8337499 (+) | False | atp13a2 |
| XR_004579706.1 | other | upstream | 1827209 | 8313817 ~ 8337499 (+) | False | atp13a2 |
| TU297455 | other | upstream | 1923941 | 8240018 ~ 8240767 (+) | False | si:ch211-197l9.2 |
| XR_004579736.1 | other | downstream | 127351 | 10292606 ~ 10339205 (+) | False | kcnab2b |
| TU299368 | other | downstream | 683596 | 10848851 ~ 10851345 (+) | False | b4galt3 |
| XR_004579720.1 | other | downstream | 706774 | 10872029 ~ 10912533 (+) | False | atp2b3b |
| XR_003403205.1 | other | downstream | 831354 | 10996609 ~ 10996743 (+) | True | LOC113530991 |
| TU299671 | other | downstream | 1066174 | 11231429 ~ 11237362 (+) | True | oard1 |
