RNA id: TCONS_00008474


Basic Information

Item Value
RNA id TCONS_00008474
length 375
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id XLOC_004174
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 27800859 ~ 27809715 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cattcacgtctgcgcggtttatgagaagAAAAGCCTGTGAATATACTTCCAGACActtttagctgctagatgtcagtcagataacatttctctttgcattgaactttcagTGTATTCCATTCAGAggtgctgtttatgttcacacagctacattacacatcaactctgagttaaaaacaaaaaaaactttaaaaaaatatttctattatttaccAGTGCATGGGTCTGGCAGTGTGAAAATGTGTAAGACATTGAAAtactttggtgtttttttttttatgtcaatgaTAAAAAGAAGGATGTGTAGCTTTCCACAATTAGTATATTAGTTGCATCTTATTATTTGTGCTGCTTAAATTGTTCTGAACAAACCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008473 lncRNA downstream 94259 27705970 ~ 27706600 (-) False XLOC_004171
TCONS_00008800 lncRNA downstream 175394 27543578 ~ 27625465 (-) False XLOC_004169
TCONS_00008801 lncRNA downstream 175404 27592643 ~ 27625455 (-) True XLOC_004169
TCONS_00007969 lncRNA downstream 175734 27592643 ~ 27625125 (-) False XLOC_004169
TCONS_00007962 lncRNA downstream 297727 27502509 ~ 27503132 (-) False XLOC_004167
TCONS_00007985 lncRNA upstream 19515 27829230 ~ 27830335 (-) False XLOC_004176
TCONS_00007993 lncRNA upstream 268928 28078643 ~ 28079691 (-) False XLOC_004178
TCONS_00007994 lncRNA upstream 268928 28078643 ~ 28079704 (-) True XLOC_004178
TCONS_00008802 lncRNA upstream 317542 28127257 ~ 28390101 (-) False XLOC_004179
TCONS_00008803 lncRNA upstream 387242 28196957 ~ 28200504 (-) True XLOC_004180
TCONS_00007975 mRNA downstream 22028 27745618 ~ 27778831 (-) True XLOC_004172
TCONS_00007972 mRNA downstream 61810 27705030 ~ 27739049 (-) False XLOC_004171
TCONS_00007973 mRNA downstream 62370 27706579 ~ 27738489 (-) False XLOC_004171
TCONS_00007971 mRNA downstream 98024 27646675 ~ 27702835 (-) True XLOC_004170
TCONS_00007970 mRNA downstream 98081 27644524 ~ 27702778 (-) False XLOC_004170
TCONS_00007977 mRNA upstream 7586 27817301 ~ 27827533 (-) False XLOC_004175
TCONS_00007978 mRNA upstream 8361 27818076 ~ 27827442 (-) False XLOC_004175
TCONS_00007979 mRNA upstream 10884 27820599 ~ 27827528 (-) False XLOC_004175
TCONS_00007980 mRNA upstream 10909 27820624 ~ 27827472 (-) False XLOC_004175
TCONS_00007981 mRNA upstream 11314 27821029 ~ 27827467 (-) True XLOC_004175
TCONS_00007974 other downstream 81590 27713464 ~ 27719269 (-) True XLOC_004171
TCONS_00007964 other downstream 297539 27503232 ~ 27503320 (-) True XLOC_004167
TCONS_00007963 other downstream 297727 27503017 ~ 27503132 (-) False XLOC_004167
TCONS_00007960 other downstream 1052430 26748292 ~ 26748429 (-) True XLOC_004165
TCONS_00007954 other downstream 1223650 26569531 ~ 26577209 (-) True XLOC_004161
TCONS_00007992 other upstream 268433 28078148 ~ 28086924 (-) False XLOC_004178
TCONS_00008006 other upstream 781173 28590888 ~ 28595428 (-) True XLOC_004184
TCONS_00008022 other upstream 1842975 29652690 ~ 29657852 (-) False XLOC_004191
TCONS_00008030 other upstream 1999982 29809697 ~ 29816202 (-) False XLOC_004195
TCONS_00008033 other upstream 2086657 29896372 ~ 29909625 (-) False XLOC_004196

Expression Profile

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