RNA id: XM_026920880.2


Basic Information

Item Value
RNA id XM_026920880.2
length 4399
RNA type mRNA
GC content 0.42
exon number 9
gene id b4galt3
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10843611 ~ 10852528 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCATAGTGGAGACTGCTCGTGATGGTACACACGTTTCCACATTAGGGTTATTTCTGATTaatccagatgtgtgtgtgtgtgtgtgtgtgtgtgggaaatgTACGCACGTGTATACGTCAGGCCCCaaactggaaaacactggagcAATAGAGTACAATTAACAATGCATGCGGGGTTGCATGCGTTTTAAGTACCTAAAAAAAtcgcccttttttttttttttttctagtttagGGATGAAGCAACGCTGTGCAATTTATTCACCTGTAAGCTTCTGAGTTGTGCGTCAATGCAAGTGGATCAAACAGGCCAAAATAGACTTAAGATCCGGAACATTAGTCTAAGAAAGGCTCCATCGATCTGTTTGTGGGGACATTGCCTCTttatctgctgctgctgctgctttctctCGGGCATGTGGCACACTGGCTGAGCTGTTGCTTCTCTTCTcggtgaatgaatgaaggcGCGTCACTGCGCTGCTCCCTCAACATGGCCGTCCGCGCGCAGCACTGTGGCAGCACGCTGGACATGGACGcctgatcacacacactttcactcgCTAGGATGTGCGCAACGGAGGCTGTTTGTGTAGGGTTCTGCTCGGCGATCGACATGATCACTGACAACCGCTAAAATCACAGCCTTGGTGATTCGTCCTCGGATGAAGGCCGGTGCAGGAGCCTCGGGCTGGATTTGAGAAGCGGCGCTTAAAGAGGGTGTACAATGTTTTGTAGCGTGCCAGAGGAAGAGGAGGCTGAGCTCTGACTAGTGTGGATGAGAGCACAGTGCCGTGATGCTGTGCTGTGGCCGAGCTCTGGACTCTCCCTGTACTCTAGCTCTGCTGGTGGGCTTCCAGTTTGCATTTGTGCTCTATTTCTCTTTGGGAGGCTTCCGTGGCCTTGTCTCTGTGCTGGTGCACTCCTCAGAACCTGAATTTGACTACTCTCGGCCACATGATGTCTACACCAACCTCAGCCAGCTCAGTGCCCTGCTGCCCCCTCACCCCAGCGGAGCCGAGCAGCAGCTCAGGGGCTGCTTGCTGCCATCACCACTGCTTGTGGGTCCTGTATCTGTGCGCCTGTCCTCCCCTCTTTCCTTGGAGGAGATAAAAGAGAAGAACCCTCTGGTGACCCCAGGAGGCCATTACCGTCCCCCGGACTGTGAACCGAGGCACCACACGGCTATCGTGGTCCCCTACCGGAACCGGCAGAGCCACCTGCGAACACTCCTCTACCATCTGCACCCTTTCCTGCAGAGGCAGCAGATACACTATGGCATCTACATTGTACACCAGTCAGGAAACTCGACATTTAACCGTGCAAAACTACTGAATGTGGGAGTGCGGGAAGCTCTGAAGGAGGAGGACTGGGGTTGTATCTTCCTTCATGATGTGGACCTGCTTCCAGAAAATGACCACAACACCTACACTTGCCACCCACAGTACCCCACTCACCTCTCTGTGGCTATGGACAAGTTCAGATACAGGCTTCCGTACCCTCAGTACTTTGGTGGAGTGTCTGCCCTCACTCCAGACCAATACCTCAAGATGAATGGCTTCCCAAATCAGTACTGGGGCTGGGGAGGAGAGGATGATGACATTGCTACTCGCCACTGGAAGGGTCAAGTTCGGCTATCTGGGATGAAGATAGTGCGCCCTCCTGTGGCCGTGGGTCATTATAAGATGATTAAGCATAAGGGGGACAAGGGTAATGAGCAGAACCCCAGAAGGTTTGACTTGTTGAAGCATACCTGGTTAAATTGGAGATCAGATGGACTCAACTCGCTCACTTATCAGCTCCTGTCCAAAGAGTTAGAGCCGCTGTACACAAACCTGAGTGTCAACATTGGGGAAGACCCTCGCCCTCCTCCCAAAAAGTCTGCACTCCCTAAAAATGCCTCTTATCCTGCAGCAAGACccaaagacagagacaaagacaagGGAACACTAGGAAGGCAGTCCACTCAAGCTACCAAATTAGAGGAGGGTCACGTAAAAGTAACCAACAGGAGTTCAGACGTTGGTCAGAAAGCTGCCGTGAAACAGGAAATTGTTTGATGACATAGACGTAGTCCATAAAGCACTGGCAGTACAAGTGGATTTGTACCGTGCCAGTTTGCATCGTTTCCTCTTTAATATCATTGAGTTTTGCACTGAGGTGAGCTTGCGGGTAAGTTGAATTATTGCACTGAATGTCTACACTGGCATGGTGTCATTTGCACAGACCTCTGCTGTACCATTTCCTGATGATCTCTTTGCCACGGAACTCATCTGAGCGTGAACCGAGCTAAGCATTAATGAAAATTGTGTGCTCCTGTGTAATTGTGCTGTAGAGACACTTGCACCAGTGCTAGTCCTGTGTGCTTATCCAGCCAGCCTGCGGTTAACTGCTAATCTTCACACCACCGTGTGGGTTCTGTCTCTTTGTGCCTTTTCTCGCTCTAGAACCAGTTTCTGTCACCATCTTATTACATATGTTCTTAATCTCAATGACAAGCATTTTTGTGCAGACTTGTGTATCGGAGTAATAGGCTACTAAATGCTCTGAATTGCTGCTGCTCTTATTTCTCATCACCATGCAGCTTTGTGATCTTGTGCTTGAGCAGACTGTTATCACTGTGTACTATTTTTGGTCTTGCTATGGAAATGTGCAGCTCATCATGTTtgcaaaagtttgtgtttttattttagaaatgtcTAATCTAAAAGTACTTTTCTTTGCTGGTCAAATAACGCTTTTTATTTTCAAGTATAATAGGGAATATCCATTATTGCCAGATGGCTCTTTTGGTTAGACAATCATAAGGATAAGTTAAATGGCTGCCAAATCAATCAGTTAACAAAATTCTGTCTTTAAAAGTTAATTTTCTATCATTATATCATATAATAGTGAGTTAGatttattcaatatattttatagtaGATTTGTTAAAGTGTCAGAGTTACAGTTTggtgaattattttattgcagttCTCATGGAAAGTGTTGCTGCATATAATTGATATAATTATCGCTATAATCTTTGTACATAAGCTATATTTAGTCTACAAAAATGCCCCAGCAGACATTCGCCATATGCAAAAATATGAGGtatttctaatttttaaaaaaatcaaacaaatatcTATACACACTGATGAGaacatattttcaaatattgaCCTATTTCTGAACcttaacactgctgtaaaatGGTTGGTGTTTTAAATGCGTTGGCTCCTCACAGAGGATATacagcactttttcttttttttttttgtatccagCAATATCAGAAAATGATTATTTGAATGTACTTCATTCCAACTATGTTGgtaatgttttctctctctctctctctctctctctccctctcccctcaTATGAATCTgccagttatttttttttttttattattatttttttttttttggcaggacTTTAATATAAAGTAATGTAACAAAGACCTTCATATAGACCTTAAATTATGAGTTAATAAACCTCTTTTTTATGACACCTTTATTAGAGTACAGGTAATTAGGTACTTTAACTTTATAGTATAGGTAATTAGATATACCTGTCATAAacctaatatttatttattcatcaccAAAATCTATTAaatagagtttaaacagaattacCTATATTatctttatctgtgtgtgtataaataggTACACGCATCTTGGCTTATTAGCATGTGTCCCAAAAACCTATTTCTTTTTACCATATTTGCAAGAcactaatatatttatttaatacagtagATTTGTATGAGATGCTTAGTAATAGTTATACTGGAATATCTAAGAGTATCATAGTCTGACAACTAATTTCCTTGTTGCTTAACGTTGTAGTAATTATCTTTGTGATTtaaagagttttgtttttttttattaaatctgtATGAGTCCATATCATCTGGAGCAGTCTGTTATATTCTATAGGCATCTTCACAAAAGTAACCTTAATAATAGAGTATCAAATGTCCAGAAGCATTTCACTTGACATAGCATGATCTCAAACTCACTGCTGCTCTAGGGTAGAATACAGCTGATCATATGTCAATTACCGTTCACTTTATTACACTGCAGAGCCCATTGTAATAGTGTAAAGTAACAGCTTGATTGTACTCTAATCAGCAGACACTGGCTTGAAGCTTTGACAAGGATCCTTGAATACTGCTACTGGTGACTTACAACAACGCTCAGCACATCTCCATGTTTCCATGGGTTATTATAGCTGCTGGTAGCATTACATCATTTGCTTCTGGGCATTAAAGCGATTTACCGATGACTAGTGAAATTAGTTGATGCTCTATTTCTGAGGGACTACAGGTGTGCTAATGCTTTATGTAATAAATTTCCATCCAGcatataaattatatagataaataaattatgttgaAATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299171 lncRNA upstream 64207 10778540 ~ 10779404 (+) False si:dkey-32e6.3
TU299172 lncRNA upstream 77504 10765126 ~ 10766107 (+) True G252732
TU299154 lncRNA upstream 187586 10655807 ~ 10656025 (+) True G252720
TU299148 lncRNA upstream 214807 10624852 ~ 10628804 (+) True LOC117599292
TU299371 lncRNA downstream 92552 10945080 ~ 10946913 (+) True G252893
TU299383 lncRNA downstream 97141 10949669 ~ 10953182 (+) False G252903
TU299384 lncRNA downstream 97141 10949669 ~ 10961642 (+) True G252903
TU299445 lncRNA downstream 145553 10998081 ~ 10999820 (+) True G252955
TU299459 lncRNA downstream 185690 11038218 ~ 11039431 (+) True G252966
XM_026921068.2 mRNA upstream 2418 10824171 ~ 10841193 (+) True bgnb
XM_026921067.2 mRNA upstream 2418 10824172 ~ 10841193 (+) False bgnb
XM_026921074.2 mRNA upstream 27577 10802060 ~ 10816034 (+) True si:dkey-32e6.6
XM_034312147.1 mRNA upstream 27577 10802061 ~ 10816034 (+) False si:dkey-32e6.6
XM_034312146.1 mRNA upstream 48001 10786494 ~ 10795610 (+) True tktb
XM_026920138.2 mRNA downstream 5115 10857643 ~ 10865184 (+) True ccnq
XM_026920493.2 mRNA downstream 19501 10872029 ~ 10913596 (+) False atp2b3b
XM_026920502.2 mRNA downstream 19501 10872029 ~ 10913596 (+) True atp2b3b
XM_026920494.2 mRNA downstream 19501 10872029 ~ 10913596 (+) False atp2b3b
XM_026920495.2 mRNA downstream 19501 10872029 ~ 10913595 (+) False atp2b3b
XR_004579736.1 other upstream 504406 10292606 ~ 10339205 (+) False kcnab2b
TU297603 other upstream 2217749 8621005 ~ 8625862 (+) False LOC113530359
TU297540 other upstream 2485511 8352789 ~ 8358100 (+) False spen
XR_004579705.1 other upstream 2506112 8312773 ~ 8337499 (+) False atp13a2
XR_004579720.1 other downstream 19501 10872029 ~ 10912533 (+) False atp2b3b
XR_003403205.1 other downstream 144081 10996609 ~ 10996743 (+) True LOC113530991
TU299671 other downstream 378901 11231429 ~ 11237362 (+) True oard1
trnah-gug_14 other downstream 407319 11259847 ~ 11259918 (+) True trnah-gug_14
trnaf-gaa_28 other downstream 415083 11267611 ~ 11267683 (+) True trnaf-gaa_28

Expression Profile