RNA id: TU299471


Basic Information

Item Value
RNA id TU299471
length 2046
lncRNA type sense_over
GC content 0.40
exon number 5
gene id LOC113530950
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11009463 ~ 11015666 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCGCTGTCATGTCAGCCTGCAGTGACATGCATGAGTGTAAAGAAGGACAAGAAAATGTCACAGTGTGATTGAATAACAGCGCTAGGTTTTTGAGGTATATGAGTTTTCAAGTGGTCTTCGCCGATACTCACAGTAGACGTTTAAGTGCAAAGATTTTGCGAAGGAGGCGACATGTttagaaataacaaaaacatgaagTATATCCTAAGTCTTGTACCCGGGAAACGACGCTTCGGAATTTACCGGTTTTTGCCCGTCTTCTTCTGCATCGGCGGTGTCATGGAGTGGGTCATGATAAACGTGCGAATAGGACGAGAGACGTTTTaTGATGTCTACAGGAGAAAACGCTCTGAGAGGGAGTACCAACAGAAAATTGAGGATGGAATAACTGTACCTCCTGAATCAGaaccaaaataaacatttttcactcCTGCAAATATGTTCTTTCTAGCTGAGCAAtaccagTCCCTCCACTGGATCTTCAGCTTAAATGTAGAGGCCAATTGGAAGAGATTTCAGACAGATGAAGCTGTTCGGATGCTGAGCAAGAACCACCGGGTTTCCATCCAGTCGCACCTCCTGCATGTTGTACCTGATGTAGTGTGTGTCGTTGCCCTTGCAGAAAGTGTCATCCGTCAGGGTGGTTATGTTATTATGCAGATGCACAACACGCAGACTCTCAGGAAGTGGTGGAATGGCCTCCAATTCATTGTCACCAAGGTACAGGAATGCCAGTTTTTTGAGTTTCTGTAATTGCAAATGCATACATTAgattatttgtaaaatacatCATATAGATGATCTTTTTTGTAGAATACTGGCACACATTTATCAAATATTACCTTTAAAACAGTTGATCTGATGCCTTTTGTTTTGAGTCGATTGTGATTGGCATTGAGTGAGATAAGCTTTGGGGGCAGCATTGGTAGTTTGATTAGTCTGTTCTCAGCGAGTGTTAGTTCTTCTAGTTGGTCCAGTTTGGAGAAGGCTGCATCCTCGATTTCCGAAATGAGATTGCCAGTCAGATCGATTCTTTTCAGTGTGCctataataaatacacatataaacaatTTTAGAAAGCCATAGactgtaatgtaaaatataattctgAAAATATGCTTAGCTTTCTAAGTTTCAGTCAGAATAGTGTAATGACTTATTCCAGCACATAAGGAGTGAATTAGACATCTGGCTAAAGACTACAAGCTTTAGGCTGCAAGCTTTAATAGATCTAAAAACTCTCTCCTTATCAAGAGCTGTGTGCTGGCTTCAGATATTGCCTTTTGGAAAGTATCATTCATTATTCTGACTACACTGATTCAGAGCCAGATATTACACACTCCCAGCTGACACTCCTTACCAAAATCAGCAAAGTCCttcttagtgattctggtgatTTTGTTGAAGCGTGCATAAAGGTATGTGGTTTCCTTTGGCAAAGGTGGTACTGATATCATTTCTGGGTTGACCTCTTCACAATACACAGATCCagataaacatacacacagcaagCAAGTGGGAAGATCTAgggggaaataatcaacttaatcTTAAATACTTTTCTTGAATTAACTCGAATATTAACAGtgatgtatgtgtttatatataaattaaacaatcacctgcttcttttttctctacTGCTGAACCTTCGTCACTTGTATTATCAACACTTCCATAGTCTGGGGCTGCAATGACCTTTTCCTTtttttttcttcacctccATGAAAAAGCTATCATCTGTCTGCCATTTGTCAAAATCCACTATCAGTAAACCACTGTTTTGATGTTCCATTTGATCATTTTGTGCTGTTGAACATAACATCCATGGTACAAgcagaaaggagaaaaataacATCCTCGAGTCCATTTTCTATGGTTCAGAAGCGGTGCTGAGAGAGACCATTAGTGTGTACCTCTGTGTCTGAAATGAGAGCCTTTAAAGTCATTTTGTGGAGGCCCTGCCTATGAGctactgagacactgagacagcCCTTAACTCACTGTGTGCTGTTGTATGACATGTCAGGTAGAGGCCTTCCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299468 lncRNA downstream 3207 11005952 ~ 11006617 (-) True G252969
TU299463 lncRNA downstream 12388 10994816 ~ 10997436 (-) True G252967
TU299464 lncRNA downstream 12388 10994816 ~ 10997436 (-) False G252967
TU299430 lncRNA downstream 97359 10904886 ~ 10912465 (-) True G252944
TU299404 lncRNA downstream 143128 10866236 ~ 10866696 (-) True G252921
TU299474 lncRNA upstream 6329 11021959 ~ 11023025 (-) False abhd6b
XR_003403192.2 lncRNA upstream 22192 11037822 ~ 11038968 (-) True LOC113530895
XR_003403161.2 lncRNA upstream 73435 11089065 ~ 11091286 (-) False LOC113530615
TU299537 lncRNA upstream 73447 11089077 ~ 11090683 (-) True LOC113530615
TU299539 lncRNA upstream 73447 11089077 ~ 11091335 (-) False LOC113530615
XM_026921186.2 mRNA downstream 5228 10999100 ~ 11004596 (-) False dnase1l1
XM_026921185.2 mRNA downstream 6058 10999100 ~ 11003766 (-) True dnase1l1
XM_034311886.1 mRNA downstream 36049 10942875 ~ 10973775 (-) True flna
XM_034311887.1 mRNA downstream 36050 10942875 ~ 10973774 (-) False flna
XM_026921244.2 mRNA downstream 68572 10932106 ~ 10941252 (-) True emd
XM_026920311.2 mRNA upstream 1186 11016816 ~ 11019715 (-) False kctd6b
XM_026920310.2 mRNA upstream 1186 11016816 ~ 11019715 (-) True kctd6b
XM_034312050.1 mRNA upstream 4901 11020531 ~ 11025009 (-) True abhd6b
XM_026921269.2 mRNA upstream 14437 11030067 ~ 11039455 (-) False slmapb
XM_026921268.2 mRNA upstream 14437 11030067 ~ 11039455 (-) True slmapb
TU299234 other downstream 371106 10636523 ~ 10638718 (-) False sinup
XR_003403171.2 other downstream 540290 10460694 ~ 10469534 (-) False usp21
TU298725 other downstream 979831 10029492 ~ 10029993 (-) True G252373
XR_003403155.2 other downstream 2431224 8566656 ~ 8578600 (-) False ttll10
TU296847 other downstream 3500077 7476274 ~ 7509747 (-) False ctnnbip1
trnae-uuc_4 other upstream 243413 11259043 ~ 11259114 (-) True trnae-uuc_4
trnan-guu_24 other upstream 257700 11273330 ~ 11273403 (-) True trnan-guu_24
TU299993 other upstream 440391 11456021 ~ 11462706 (-) False LOC113530309
TU299994 other upstream 440391 11456021 ~ 11462706 (-) True LOC113530309
TU300077 other upstream 541257 11556887 ~ 11568530 (-) False avpr2ab

Expression Profile