RNA id: TU299500


Basic Information

Item Value
RNA id TU299500
length 389
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G252996
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11104139 ~ 11104527 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTTAGATCTCATCTGGAAAACTCAAAAACACCTACGCACTGGAGACGTCATttgaaaaaagttacaatagCTGTGCCATTCAGGTCTTCGGGGACTTCTAAGTAGCATGTGGCTACTAAAGGCACAAAGCACAACCTGAACTAATGTCAAAACATAGCAGTAGATGTCTTGCTTCTATAAAGATGGCACCACTATAATCCCACTATTCACttagactatatggccaaaagtatgtggacacctgcctatcacacccatatgtgcccattccaaaaccattcaaccacaagagcattagtgaggtcaggcactgatgttgggcgaagaggcctggagtgcagttggcattccaattcatcccagaggtgtttagtggagttgaggtcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299459 lncRNA upstream 64708 11038218 ~ 11039431 (+) True G252966
TU299445 lncRNA upstream 104319 10998081 ~ 10999820 (+) True G252955
TU299384 lncRNA upstream 142497 10949669 ~ 10961642 (+) True G252903
TU299383 lncRNA upstream 150957 10949669 ~ 10953182 (+) False G252903
TU299371 lncRNA upstream 157226 10945080 ~ 10946913 (+) True G252893
TU299682 lncRNA downstream 140234 11244761 ~ 11245472 (+) True G253152
TU299681 lncRNA downstream 141371 11245898 ~ 11246862 (+) True G253151
TU299753 lncRNA downstream 266176 11370703 ~ 11372352 (+) True G253210
TU299755 lncRNA downstream 268468 11372995 ~ 11376620 (+) True G253212
TU299761 lncRNA downstream 287907 11392434 ~ 11414634 (+) False wu:fa11c10
XM_034312187.1 mRNA upstream 551 11090187 ~ 11103588 (+) False tasorb
XM_034312188.1 mRNA upstream 551 11090187 ~ 11103588 (+) False tasorb
XM_034312189.1 mRNA upstream 551 11090187 ~ 11103588 (+) False tasorb
XM_034312186.1 mRNA upstream 551 11090188 ~ 11103588 (+) True tasorb
XM_026920771.2 mRNA upstream 551 11090189 ~ 11103588 (+) False tasorb
XM_026921276.2 mRNA downstream 19417 11123944 ~ 11223630 (+) False LOC113530897
XM_026921274.2 mRNA downstream 19427 11123954 ~ 11223630 (+) True LOC113530897
XM_026921273.2 mRNA downstream 19914 11124441 ~ 11223630 (+) False LOC113530897
XM_026921275.2 mRNA downstream 19914 11124441 ~ 11223630 (+) False LOC113530897
XM_034312174.1 mRNA downstream 20673 11125200 ~ 11223630 (+) False LOC113530897
XR_003403205.1 other upstream 107396 10996609 ~ 10996743 (+) True LOC113530991
XR_004579720.1 other upstream 191606 10872029 ~ 10912533 (+) False atp2b3b
TU299368 other upstream 252794 10848851 ~ 10851345 (+) False b4galt3
XR_004579736.1 other upstream 764934 10292606 ~ 10339205 (+) False kcnab2b
TU297603 other upstream 2478277 8621005 ~ 8625862 (+) False LOC113530359
TU299671 other downstream 126902 11231429 ~ 11237362 (+) True oard1
trnah-gug_14 other downstream 155320 11259847 ~ 11259918 (+) True trnah-gug_14
trnaf-gaa_28 other downstream 163084 11267611 ~ 11267683 (+) True trnaf-gaa_28
XR_003403199.2 other downstream 288065 11392592 ~ 11415449 (+) False wu:fa11c10
XR_003403198.2 other downstream 295509 11400036 ~ 11415449 (+) False wu:fa11c10

Expression Profile